Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05054 ATGGAGTGTCTTTTGTTGTTGCTTCTTTGCTTTTCTACATTCTTATATGTTACTTCTGCATTGAATTTTGAGGGTTTATCTCTATTATCACTCTTGAACCACTTTACTGTTGTGCCTGCTAGCATAAACTCCACATGGAATTCCTCTCATTCCACTCCATGTTCATGGAATGGAGTTCAATGTAATCATGCCCTAAATGTAACATCTCTAAACCTAAGTGATTATTCACTTTTTGGTCAATTAGGGCCTGAAATTGGAAATTTAGTTCATCTTGAAACCCTAGATTTGTCAATCAATGATCTCTCTGGAGAAATTCCACCAGAGTTGAGCAATTGTAGTATGCTTGAGTACATGGATATTTCTGTAAACAATTTCAGTGGTGAAATTCCTCAATCCTTGTTTAGTATTATTCAATTGCAAGAATTGTATCTCAATAATAACAGTTTAAGAGGTTCAATTCCTGCTAATATTGGAAACCTTAATAACCTTAACTCGTTCGATTTCGAGAGTAATCAGTTGTCCGGGGAAATTCCGGAATCCATGGGAAATTGTAGTCAATTGAGTTTCATAGTTTTGGATTCGAATCAATTGGAGGGAGTTATTCCTGAGAGTCTAAACAATCTAAAAGAACTTTTTTATTTAAGCGTCAATTTTAATAATCTTGAAGGTACCATTCAATTAGGGTTGAGAAATTGCAAAAAGTTAGAAATTTTGAGTCTTTCATACAATAATTTTAGTGGTGGTATTCCATCAAGTTTAGGGAATTGCAGTGGTCTGGTAGAGTTCTATGCTGCAATGAATCAGTTAGATGGTAACATACCATCAAGCTTCGGTCTGCTTCATAACCTTTCTAAGCTAATAATTCCAGCGAATCTTTTGTCGGGGAATATACCTCCACAGATCGGTAATTGCAAGTCATTGGAAATGTTACATTTGTATACCAATAGACTTGATGGAGAAATTCCTAGTGAATTGGGAAAATTGAGTAAGTTACGCGATCTTCGATTGTATGAAAACCGTCTGGTAGGGGAAATTCCAGTTAGCATATGGAAGATTCAAAGCCTTGTTCATGTTCTTTTGTATAATAATAGTCTCTCCGGGGAACTACCTTTAGAGATGACTGAGCTCAAAAATCTCAAGAACGTCTCATTGTTTAACAACCGATTCTCTGGAGTTATACCTCAAACTTTAGGAATTAATAGCAGTTTGGTGCTGTTGGATGTTGTGTTTAACATGTTCAATGGTACACTTCCTCCAAATCTTTGTTTTGGGAAGAAATTAGCAAGGCTTAATATGGCTGGCAATCGATTTATTGGAAGGATACCTTCTGATGTAGGAAGGTGTACAAGTCTCATAAGGTTGAGACTCGGAGATAATTATTTTACGGGCCCTCTTCCTGATTTCGCAACGAATTCAAGTATCGGTTACATGGATATCAGCAACAACAATATCAATGGAACAATTCCATCAAGTTTGAGTAACTGCACAAATCTTTCACTTTTAAATTTGTCCATGAACAGCTTAACGGGTTCTGTACCTTTAGAGCTTGGAAACCTTGTGAATCTCCAGAGTTTGCATCTTTCTTACAATAGCTTAGAAGGTCCTTTGCCACCTCAACTGTCAAAGTGTACCAAAATGAGTAGTTTCGATGTGGGATTCAATTTCCTTAATGGTTCGTTTCCGTCGAGTTTCCAGAGCTGGACAACATTAGCCACTTTAATTCTCAGAGAGAATCGTTTTAGTGGGGGAATTCCAGCTTTCTTGTCAGAATTTGAAAATCTCAACGATTTAAAACTCGGTGGAAATAATTTTGGTGGAAATATTCCTATATCAATTGGAAAAATGCAGAATTTGCGGTATGATTTGAACCTAAGTGCTAATGGACTAGTAGGCAAGCTTCCTCCGGAGATCGGAAACCTGAATAGTCTGCTAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTCGACGAGCTCAGTTCATTAACCGAATTGAACATTTCATACAATTCTTTTGAAGGTCCTCTATCACAACAACTGATGAACTTAACGAATTCTTCTCAATCATTTTTGGGAAATCATGGCCTGTGTGTTAGCCTTTCGTTGTCCAATGGTTTGAATTTCGCAAGAAGCAGCAATTTAAGCCTATGTAATCACGATGACACAAAATCAAAAAAGCTGAGTAACATTGCAATTGTGATGATAGCACTTGGATCCTCGATACTTGCCGTGCTCTTGTTAGGACTAACTTATATATTTCTAGTCAGAAGGTCTAAGCAGGAAGCCGTCATCACCGAGCAAAATGATTCTTCAAACCTTCTCAAGAAAGTGATGGAAGCTACACAGAATCTAAGTGACGAGTATATTATAGGCAGAGGAGCTGCAGGAGTTGTTTACAAAGCTGTAATTAGTCCAGACAAAATTTTGGCAGTGAAGAAGCTTGTCTTCGGGGAGGATGAACGAAAACACATAAGCATGTCAAGAGAAGTTGAAGCACTTTCAAAGATTAGGCATAGAAATTTGGTGAGACTTGAACATGTTTGGTTGAGAGAAAATTATGGTCTAATCTCATACAAATACATGCCAAATGGAAGTCTTTATGAGGCTTTGCACGAGAATAATCCACCGCAGTCCTTAAACTGGAACGTAAGGAATAAGATAGCTGTTGGAATTGCTCAGAGTTTGGTTTATCTTCATTTTGACTGTGATCCTGTCATAGTTCATAGAGACATCAAAACATGCAATATACTTTTAGATTCTGAAATGGAGCCTCATGTTACTGATTTCGGTCTTGCTAAGATTTTGCACCGATCTTCTAGTTCTACCTCGGCACAGTCAATAAATGTTTCTGGTACACTTGGTTATATTGCACCAGAGAATGCTTATACAAGAGCAAAGGGTAAGGAATCTGATGTATACAGTTATGGTGTGGTTTTGCTTGAGTTGATATCAAGAAAAAAGGCGATAGACCCATCATTTATGGAAGGAATGGATATAGTTACATGGGTGAGATCTTTGTGGGAAGAAGCAGGAGTTGTTGATGAGATTGTTGATTTAGAACTTGCCAATGAAATTTCAAATTCTAATAAAGTGATGAAGGAAGTAACCAAAGTGCTTATGGTGGCTTTGAGATGTACAGAGAGTGATCCACGGAAGAGACCTACAATGAGAGATGTTATCAAGAATTTGTAG 3204 0.3739 MECLLLLLLCFSTFLYVTSALNFEGLSLLSLLNHFTVVPASINSTWNSSHSTPCSWNGVQCNHALNVTSLNLSDYSLFGQLGPEIGNLVHLETLDLSINDLSGEIPPELSNCSMLEYMDISVNNFSGEIPQSLFSIIQLQELYLNNNSLRGSIPANIGNLNNLNSFDFESNQLSGEIPESMGNCSQLSFIVLDSNQLEGVIPESLNNLKELFYLSVNFNNLEGTIQLGLRNCKKLEILSLSYNNFSGGIPSSLGNCSGLVEFYAAMNQLDGNIPSSFGLLHNLSKLIIPANLLSGNIPPQIGNCKSLEMLHLYTNRLDGEIPSELGKLSKLRDLRLYENRLVGEIPVSIWKIQSLVHVLLYNNSLSGELPLEMTELKNLKNVSLFNNRFSGVIPQTLGINSSLVLLDVVFNMFNGTLPPNLCFGKKLARLNMAGNRFIGRIPSDVGRCTSLIRLRLGDNYFTGPLPDFATNSSIGYMDISNNNINGTIPSSLSNCTNLSLLNLSMNSLTGSVPLELGNLVNLQSLHLSYNSLEGPLPPQLSKCTKMSSFDVGFNFLNGSFPSSFQSWTTLATLILRENRFSGGIPAFLSEFENLNDLKLGGNNFGGNIPISIGKMQNLRYDLNLSANGLVGKLPPEIGNLNSLLKLDLSWNNLTGSIQVLDELSSLTELNISYNSFEGPLSQQLMNLTNSSQSFLGNHGLCVSLSLSNGLNFARSSNLSLCNHDDTKSKKLSNIAIVMIALGSSILAVLLLGLTYIFLVRRSKQEAVITEQNDSSNLLKKVMEATQNLSDEYIIGRGAAGVVYKAVISPDKILAVKKLVFGEDERKHISMSREVEALSKIRHRNLVRLEHVWLRENYGLISYKYMPNGSLYEALHENNPPQSLNWNVRNKIAVGIAQSLVYLHFDCDPVIVHRDIKTCNILLDSEMEPHVTDFGLAKILHRSSSSTSAQSINVSGTLGYIAPENAYTRAKGKESDVYSYGVVLLELISRKKAIDPSFMEGMDIVTWVRSLWEEAGVVDEIVDLELANEISNSNKVMKEVTKVLMVALRCTESDPRKRPTMRDVIKNL 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05054 1067 SMART serkin_6 788 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05054 1067 SUPERFAMILY Protein kinase-like (PK-like) 775 1066 IPR011009 -
Vivi1g05054 1067 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 20 171 - -
Vivi1g05054 1067 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 172 425 - -
Vivi1g05054 1067 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 755 864 - -
Vivi1g05054 1067 Pfam Protein kinase domain 791 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05054 1067 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 515 1067 - -
Vivi1g05054 1067 SMART LRR_typ_2 88 112 IPR003591 -
Vivi1g05054 1067 SMART LRR_typ_2 328 352 IPR003591 -
Vivi1g05054 1067 SMART LRR_typ_2 519 543 IPR003591 -
Vivi1g05054 1067 SMART LRR_typ_2 136 160 IPR003591 -
Vivi1g05054 1067 Gene3D Ribonuclease Inhibitor 273 374 IPR032675 -
Vivi1g05054 1067 Pfam Leucine rich repeat 477 532 IPR001611 GO:0005515
Vivi1g05054 1067 ProSitePatterns Serine/Threonine protein kinases active-site signature. 910 922 IPR008271 GO:0004672|GO:0006468
Vivi1g05054 1067 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Vivi1g05054 1067 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 426 710 - -
Vivi1g05054 1067 SUPERFAMILY RNI-like 273 617 - -
Vivi1g05054 1067 Gene3D Ribonuclease Inhibitor 179 272 IPR032675 -
Vivi1g05054 1067 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
Vivi1g05054 1067 SUPERFAMILY RNI-like 69 390 - -
Vivi1g05054 1067 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 865 1067 - -
Vivi1g05054 1067 Gene3D Transferase(Phosphotransferase) domain 1 865 1067 - -
Vivi1g05054 1067 Gene3D Phosphorylase Kinase; domain 1 756 864 - -
Vivi1g05054 1067 SUPERFAMILY L domain-like 584 693 - -
Vivi1g05054 1067 Gene3D Ribonuclease Inhibitor 375 708 IPR032675 -
Vivi1g05054 1067 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vivi1g05054 1067 ProSiteProfiles Protein kinase domain profile. 788 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05054 Vivi-Chr1 110853726 110857545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05054 4 1067 Receptor kinase-like Gene Family AT1G17750 48.429 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g05054 Pkinase 8.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05054 - - gmx:100817655 1442.56