Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05033 ATGGAACCTGCCCATGATCATCATCAACATAATCATCATCAACATGATCATCATCAGCATGATCATCATCAACATGATCATCAACAGCAGCAACAACAACAACAACAACAACTCTCTTTAGCCTCTAAGGAACTCAGCAATATCATCAAAGGGAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATTCCTTTTTCCATCACTGCTAATTCTTCAACTGGTGAAGGAGGTGGAGCAACAGGTGAAAGAGAAGATTGTTACAACAATGGTGATGATGTTGTCAACAACAACAATATCAATGTCATCCATAACAACAACAATACCTCTCCGACAACATCTTATGTTGAAGAGAAACAGGACAGTGTTATGGATGATGAAGAACATGATATGGCAAACTGTTTGATTCTATTGGCACAGGGACAATCTAAGGAATCGCCGAAAACTACTGATGAATTAGACGGTGGAATGATGAACTATGCGAAATACAGCAGTAGAAAGTTCATGGAAGCTGCTAGTTTGGATTCTGGAAGAGCTGGTTTCTATGTCTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCACTTGGCGGCCATAGAGCGAGTCACAAAAAGCCGAAAGCATTAGCAATTGCTCAAGAGAGGAAACAGTTTTTCGATGATGATCAAGAGTTTCAATTCAAGCCGAATCATAAACCAATTTCCCTTCAATTGAATAACAATGGTAAGGGAAATCTATACGGCGGAAACAGCAACCACAACAACAGCACCAACAACAACAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTCGGTGGGCACATGAGGCGCCACCGCGCCCCGGTGGGGACATCAACTGCCAACACCACACTGTCATTGACACCAATGGCTTTAGAGCCTGATGAAGATCATCAACCTAGAAAGAAAAGGAATGTTCTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGATGATCAGAAAGAATCAAAGTTTGCCTTTGCTTCCAAGCAACACCAACAACAACATGGCCAAAAACAACAACAGCAGCAACAACAACAGCAACAACAGCAACAACAGCAGCAACAGCAGCAAACAAATCTTGTCTTCTCGGCACCAGCTTTGGTAGATTGTCATTACTAA 1179 0.4165 MEPAHDHHQHNHHQHDHHQHDHHQHDHQQQQQQQQQQLSLASKELSNIIKGKRTKRVRPQSPIPFSITANSSTGEGGGATGEREDCYNNGDDVVNNNNINVIHNNNNTSPTTSYVEEKQDSVMDDEEHDMANCLILLAQGQSKESPKTTDELDGGMMNYAKYSSRKFMEAASLDSGRAGFYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQERKQFFDDDQEFQFKPNHKPISLQLNNNGKGNLYGGNSNHNNSTNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTSTANTTLSLTPMALEPDEDHQPRKKRNVLSLDLDLNLPAPEDDQKESKFAFASKQHQQQHGQKQQQQQQQQQQQQQQQQQQQTNLVFSAPALVDCHY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05033 392 MobiDBLite consensus disorder prediction 311 325 - -
Vivi1g05033 392 MobiDBLite consensus disorder prediction 61 77 - -
Vivi1g05033 392 MobiDBLite consensus disorder prediction 279 377 - -
Vivi1g05033 392 Coils Coil 357 378 - -
Vivi1g05033 392 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Vivi1g05033 392 Gene3D Classic Zinc Finger 181 289 - -
Vivi1g05033 392 MobiDBLite consensus disorder prediction 1 83 - -
Vivi1g05033 392 MobiDBLite consensus disorder prediction 29 44 - -
Vivi1g05033 392 PANTHER ZINC FINGER PROTEIN ZAT5 72 364 - -
Vivi1g05033 392 MobiDBLite consensus disorder prediction 244 265 - -
Vivi1g05033 392 SUPERFAMILY beta-beta-alpha zinc fingers 182 289 IPR036236 -
Vivi1g05033 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 289 IPR013087 -
Vivi1g05033 392 SMART c2h2final6 267 289 IPR013087 -
Vivi1g05033 392 SMART c2h2final6 183 205 IPR013087 -
Vivi1g05033 392 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Vivi1g05033 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Vivi1g05033 392 MobiDBLite consensus disorder prediction 346 377 - -
Vivi1g05033 392 Pfam C2H2-type zinc finger 182 208 - -
Vivi1g05033 392 Pfam C2H2-type zinc finger 266 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05033 Vivi-Chr1 110571982 110573716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05033 41 392 C2H2 Transcription Factor Family AT5G04390 44.764 1.04e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g05033 zf-C2H2_6 9.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05033 - - vvo:131614278 595.504