Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05027 ATGGGTCACGAAACTCTCTTGCTCACTGCCCCTCCTACTACCACACTAGTGAGCCACCCACTCTCAGTCTCTGTACCATCTTCTTCTGCAACTGCTGCACCACCTACCTCCCTTGCTCCTGGATTTAGGTTTCACCCAACTGATGAGGAACTTGTTATTTATTACCTCAAGCGCAAGTTTGCTGGAAAACCCTTCCGATTTGATGCTATAGCAGAAGTTGATATCTACAAGAGTGAGCCCTGGGACCTCTCAGATAAATCAAGGTTGAAGACCAGGGACCAGGAATGGTATTTCTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGCAGAATGAACAGGGCTACCAATAGAGGTTACTGGAAAGCTACCGGAAATGATCGTCCGGTTAAGCATGATCTAAGGACTGTAGGGTTGAAGAAAACTCTGGTGTTTCACAGTGGCCGTGCTCCTGATGGGAAGAGGACTAATTGGGTTATGCATGAGTACAGACTTGTTGAAGAAGAGATGGAGAGGGATGGGTCTGGACCCTCTCAGCAACAGGATGCGTATGTCTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCTAATGGACAACGATATGCACCTTTTGTTGAAGAGGAGTGGGAAGAAGGATTGGGAATGGTTCCTGGAGCCGAGCCTGTGAGTGATGGTCCTGTTTATCTCCCTCTGCGTATTGAAGGAAACAACGGCGTTTCATGCAGCGAAGAGAGAAGCATTGTTGTGAAGGACACTCATTCCAACAATAAAACTCCACTTGACGTGAACAAGCTACCAATTGAAACTCGAAATCTTCTTGCTGTATGCAAGAGGGAAAGCATGACTGAGTACCCATCCCCAGAAAAGACTGATTCTAAGCGTATACATGCAGATGACGAGTACCCACTCCAAATCGAAAACCCAAAGCCCTTACCTCAAATATACAAAAGGCGGCGTCATAACTTGAACTCCAACCATTCCAATGTTTCTGGAGAGTCATTCCCTATCAGTCAGGATCCATGCTCATCCACAATCACCACGGCCGCGACAACACTCCAGACAACCATGGCCCCCGCCGCAACCACCAACCCAGCACCGAAAAAACATTTTCTGTCCGCACTGGTGGAGTTTTCTCTCTTGGAATCACTCGAATCAAAGGAAAACCACACCTTGGTTCAGCCAGAGGATTTCGACTTGACAAACCTTGAATCGTCCGTGCCTCCCAGTGTTGCAAAGTACATCAAACACCTGCAAAGTGAGACACAGAAGCTTGGCGTTGAGAAGGAGACAATGCGGTTCGAGTTGACAAGTGCTCAAGCCATGATTAATATTCTTCAGTCCCGCGTCGAAACTCTGAGTAAAGAGAACAGCGAAATGAAGAAGATGATGATGAGAAATCCATAG 1410 0.4667 MGHETLLLTAPPTTTLVSHPLSVSVPSSSATAAPPTSLAPGFRFHPTDEELVIYYLKRKFAGKPFRFDAIAEVDIYKSEPWDLSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNRGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERDGSGPSQQQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGLGMVPGAEPVSDGPVYLPLRIEGNNGVSCSEERSIVVKDTHSNNKTPLDVNKLPIETRNLLAVCKRESMTEYPSPEKTDSKRIHADDEYPLQIENPKPLPQIYKRRRHNLNSNHSNVSGESFPISQDPCSSTITTAATTLQTTMAPAATTNPAPKKHFLSALVEFSLLESLESKENHTLVQPEDFDLTNLESSVPPSVAKYIKHLQSETQKLGVEKETMRFELTSAQAMINILQSRVETLSKENSEMKKMMMRNP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05027 469 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 37 337 - -
Vivi1g05027 469 FunFam Nac domain-containing protein 86 47 195 - -
Vivi1g05027 469 SUPERFAMILY NAC domain 30 193 IPR036093 GO:0003677|GO:0006355
Vivi1g05027 469 ProSiteProfiles NAC domain profile. 38 192 IPR003441 GO:0003677|GO:0006355
Vivi1g05027 469 Gene3D NAC domain 47 195 IPR036093 GO:0003677|GO:0006355
Vivi1g05027 469 Pfam No apical meristem (NAM) protein 40 165 IPR003441 GO:0003677|GO:0006355
Vivi1g05027 469 Coils Coil 437 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05027 Vivi-Chr1 110256014 110261833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05027 1 463 NAC Transcription Factor Family AT3G10480 45.208 1.26e-122 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g05027 NAM 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05027 - - tpra:123908634 660.218