Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05026 ATGACGATTTTGAGATATGAACAATTTGCCAATAAATCAAGGTTGAAGACCAGGGACCAGGAATGGTATTTCTTTAGTGCATTGGACAAGAAGTATGGAAATGGTGGCAGAATGAACAGGGCTACCAATAGAGGTTACTGGAAAGCTACCGGAAATGATCGTCCGGTTAAGCATGATCTAAGGACTGTAGGGTTGAAGAAAACTCTGGTGTTTCACAGTGGCCGTGCTCCTGATGGGAAGAGGACTAATTGGGTTATGCATGAGTACAGACTTGTTGAAGAAGAGATGGAGAGGGATGGGTCTGGACCCTCTCAGCAACAGGATGCGTATGTCTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCTCCTAATGGACAACGATATGCACCTTTTGTTGAAGAGGAGTGGGAAGAAGGATTGGGAATGGTTCCTGGAGCCGAGCCTGTGAGTGATGGTCCTGTTTATCTCCCTCTGCGTATTGAAGGAAACAACGGCGTTTCATGCAGCGAAGAGAGAAGCATTGTTGTGAAGGACACTCATTCCAACAATAAAACTCCACTTGACGTGAACAAGCTACCAATTGAAACTCGAAATCTTCTTGCTGTATGCAAGAGGGAAAGCATGACTGAGTACCCATCCCCAGAAAAGACTGATTCTAAGCGTATACATGCAGATGACGAGTACCCACTCCAAATCGAAAACCCAAAGCCCTTACCTCAAATATACAAAAGGCGGCGTCATAACTTGAACTCCAACCATTCCAATGTTTCTGGAGAGTCATTCCCTATCAGTCAGGATCCATGCTCATCCACAATCACCACGGCCGCGACAACACTCCAGACAACCATGGCCCCCGCCGCAACCACCAACCCAGCACCGAAAAAACATTTTCTGTCCGCACTGGTGGAGTTTTCTCTCTTGGAATCACTCGAATCAAAGGAAAACCACACCTTGGTTCAGCCAGAGGATTTCGACTTGACAAACCTTGAATCGTCCGTGCCTCCCAGTGTTGCAAAGTACATCAAACACCTGCAAAGTGAGACACAGAAGCTTGGCGTTGAGAAGGAGACAATGCGGTTCGAGTTGACAAGTGCTCAAGCCATGATTAATATTCTTCAGTCCCGCGTCGAAACTCTGAGTAAAGAGAACAGCGAAATGAAGAAGATGATGATGAGAAATCCATAG 1188 0.4588 MTILRYEQFANKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNRGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERDGSGPSQQQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGLGMVPGAEPVSDGPVYLPLRIEGNNGVSCSEERSIVVKDTHSNNKTPLDVNKLPIETRNLLAVCKRESMTEYPSPEKTDSKRIHADDEYPLQIENPKPLPQIYKRRRHNLNSNHSNVSGESFPISQDPCSSTITTAATTLQTTMAPAATTNPAPKKHFLSALVEFSLLESLESKENHTLVQPEDFDLTNLESSVPPSVAKYIKHLQSETQKLGVEKETMRFELTSAQAMINILQSRVETLSKENSEMKKMMMRNP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05026 395 Coils Coil 363 390 - -
Vivi1g05026 395 ProSiteProfiles NAC domain profile. 1 118 IPR003441 GO:0003677|GO:0006355
Vivi1g05026 395 Gene3D NAC domain 3 121 IPR036093 GO:0003677|GO:0006355
Vivi1g05026 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 266 - -
Vivi1g05026 395 Pfam No apical meristem (NAM) protein 16 91 IPR003441 GO:0003677|GO:0006355
Vivi1g05026 395 SUPERFAMILY NAC domain 15 119 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05026 Vivi-Chr1 110256014 110273051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05026 9 389 NAC Transcription Factor Family AT3G10480 45.205 7.72e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g05026 NAM 6.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05026 - - tpra:123908634 550.436