Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05024 ATGGCTATCTACGACGGTCCTGGCTTCCGGTTCCACCCTACCGATGAAGAGATCATTTGCTTCTATCTGAAGCGGAAGCTCACCGGAAATTTACCTCCTGCTTTCGACCATTTTGCTGTTATCGACATCTACAAGTTCGAGCCGTGGGATCTTCCCAGTTTGTCGAAGCTGAAGACCAAGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTATGGTAATAGTTTGAGGCTGAATCGTGCTACTGATAGAGGGTACTGGAAGACTACGGGGAAGGATCGCATTATCAAGAATGGGAAGGATGTTGTTGGAATGAAGAAGACTCTTGTTTATCACTCTGGGAGGGCTCCTCGTGGTGACAGAACCAATTGGGTCATGCATGAATACAAGATGGTTAACGAGACCTTGGCCAGAGCTGGAATGCAGGACACTTATGTGCTCTGTAGGGTATTTGAGAAGAGTGGTTCTGGGCCTAAGAATGGGGAGAAATATGGGGCTCCCTTTATCGAGGCGGAATGGGAGCATGTTGGTAGACTGGTGGATCCCGTGCTGCCGGTTGGTAATGAGCTTATGATCCAAGAAGTGTTTGCTCCTGCTTCAGTTCCAGCACTTGCTCCTGCTCCTGTACTAGCACTTGCTCCTTATGTTGGTGACCAGGTAGATCCCTTGCCAACTGTTGGCAACGAGTCTTTGAAACAAGAAGTATCTGCTTCTGCTCCTACTGATGATGATTTTGTTGAAGCCAAAGACCTTGACGAGAAGTTTGATGATACTAGTGATACAATCGGAAATGCTGATTTGGCATCGATCATCTGTTATGGGGAGTCTAGCAGTTATCCTCCTCAGCATTCCCAAACATTTCTCAGTGATCACAAGCAAATGGAACCTGAGTTTGCGCTTTATGGTAATCAGATTGATCAACCCGATAATATGGCTGATATATTTAATGTGAATATCAATTATGTGCAAGATGGATACAATGGCGAGACAAACCATAATGAGAATCCTCTGAATTTCAATTTTGAATTTGAGGATCCTGATGAATATTTTGATGTCTGTGATTATCTTATGAGTTCTGAAGAAGCATATGAGGAAACCAATGATTTTAAGAATCTTGACGAAGCTATTTCCATTGAGACAGATCCTTCTGTTGCTGCTGCAATGGTAGACGAGTACCTTGCATTCCCTGAGGAAGACATTTTTCAACATGTATGCTTTGAATCTTCTTTGAATGTAGGGAGTGAAAGCCCCATTGCCAATCACGGACAACCTTTCGTTGAGCAGAATGTGGAGAGCGATACCAACAATAGTCCCTTGGCAAGCAAGCATGTTCTTGAAGGACAGTCAAGTAATGAACCTTCTTTCCCTGAAGGGAATGCTGAGGTGTCTAATTGGGTCTCAGGAGACGCCAATTACTTCGTGAGGCAAGCTAATAAATTGCTGGCCCACATGCCTGCTTCACCTGCATTTGCTTCAGAGTTTCCTACCGTGGAGTTTGCTCACGGGATATCTGCTGCAGCTGAGTCTTCCAGTTCTGCTCACATCACTGCAGGTATGATAAGCATAACAGATATTTCCTTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGATTTTAACACCATTGGGTTTACCCAAACTGATGTTAACTCTGCTACTTTGGTTCCTATTTCTGACCTGGTCTGTAGCAAAACTGCATTCATGTTATCACATGGGTGGGTTTTCTTGGTGGGTTTCTCAGTTGTTGTTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACTGGTAAATGA 1812 0.4421 MAIYDGPGFRFHPTDEEIICFYLKRKLTGNLPPAFDHFAVIDIYKFEPWDLPSLSKLKTKDLEWYFFTVLDKKYGNSLRLNRATDRGYWKTTGKDRIIKNGKDVVGMKKTLVYHSGRAPRGDRTNWVMHEYKMVNETLARAGMQDTYVLCRVFEKSGSGPKNGEKYGAPFIEAEWEHVGRLVDPVLPVGNELMIQEVFAPASVPALAPAPVLALAPYVGDQVDPLPTVGNESLKQEVSASAPTDDDFVEAKDLDEKFDDTSDTIGNADLASIICYGESSSYPPQHSQTFLSDHKQMEPEFALYGNQIDQPDNMADIFNVNINYVQDGYNGETNHNENPLNFNFEFEDPDEYFDVCDYLMSSEEAYEETNDFKNLDEAISIETDPSVAAAMVDEYLAFPEEDIFQHVCFESSLNVGSESPIANHGQPFVEQNVESDTNNSPLASKHVLEGQSSNEPSFPEGNAEVSNWVSGDANYFVRQANKLLAHMPASPAFASEFPTVEFAHGISAAAESSSSAHITAGMISITDISFRGNAMDWMVGKNGDFNTIGFTQTDVNSATLVPISDLVCSKTAFMLSHGWVFLVGFSVVVLSLSFKIGSFMYTGK 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05024 603 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vivi1g05024 603 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 278 - -
Vivi1g05024 603 MobiDBLite consensus disorder prediction 430 459 - -
Vivi1g05024 603 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Vivi1g05024 603 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Vivi1g05024 603 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05024 Vivi-Chr1 110215617 110219707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05024 7 595 NAC Transcription Factor Family AT5G04410 34.992 1.30e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g05024 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05024 - - vvo:131643826 1167.53