Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05022 ATGGCTATCTACGACGGTCCTGGCTTCCGGTTCCACCCTACCGATGAAGAGATCATTTGCTTCTATCTGAAGCGGAAGCTCACCGGAAATTTACCTCCTGCTTTCGACCATTTTGCTGTTATCGACATCTACAAGTTCGAGCCGTGGGATCTTCCCAGTTTGTCGAAGCTGAAGACCAAGGATTTGGAATGGTACTTCTTCACTGTGCTGGACAAGAAGTATGGTAATAGTTTGAGGCTGAATCGTGCTACTGATAGAGGGTACTGGAAGACTACGGGGAAGGATCGCATTATCAAGAATGGGAAGGATGTTGTTGGAATGAAGAAGACTCTTGTTTATCACTCTGGGAGGGCTCCTCGTGGTGACAGAACCAATTGGGTCATGCATGAATACAAGATGGTTAACGAGACCTTGGCCAGAGCTGGAATGCAGGACACTTATGTGCTCTGTAGGGTATTTGAGAAGAGTGGTTCTGGGCCTAAGAATGGGGAGAAATATGGGGCTCCCTTTATCGAGGCGGAATGGGAGCATGTTGGTAGACTGGTGGATCCCGTGCTGCCGGTTGGTAATGAGCTTATGATCCAAGAAGTGTTTGCTCCTGCTTCAGTTCCAGCACTTGCTCCTGCTCCTGTACTAGCACTTGCTCCTTATGTTGGTGACCAGGTAGATCCCTTGCCAACTGTTGGCAACGAGTCTTTGAAACAAGAAGTATCTGCTTCTGCTCCTACTGATGATGATTTTGTTGAAGCCAAAGACCTTGACGAGAAGTTTGATGATACTAGTGATACAATCGGAAATGCTGATTTGGCATCGATCATCTGTTATGGGGAGTCTAGCAGTTATCCTCCTCAGCATTCCCAAACATTTCTCAGTGATCACAAGCAAATGGAACCTGAGTTTGCGCTTTATGATCCTTCTGTTGCTGCTGCAATGGTAGACGAGTACCTTGCATTCCCTGAGGAAGACATTTTTCAACATGTATGCTTTGAATCTTCTTTGAATGTAGGGAGTGAAAGCCCCATTGCCAATCACGGACAACCTTTCGTTGAGCAGAATGTGGAGAGCGATACCAACAATAGTCCCTTGGCAAGCAAGCATGTTCTTGAAGGACAGTCAAGTAATGAACCTTCTTTCCCTGAAGGGAATGCTGAGGTGTCTAATTGGGTCTCAGCTGGAGACGCCAATTACTTCGTGAGGCAAGCTAATAAATTGCTGGCCCACATGCCTGCTTCACCTGCATTTGCTTCAGAGTTTCCTACCGTGGAGTTTGCTCACGGGATATCTGCTGCAGCTGAGTCTTCCAGTTCTGCTCACATCACTGCAGGTATGATAAGCATAACAGATATTTCCTTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGATTTTAACACCATTGGGTTTACCCAAACTGATGTTAACTCTGCTACTTTGGTTCCTATTTCTGACCTGGTCTGTAGCAAAACTGCATTCATGTTATCACATGGGTGGGTTTTCTTGGTGGGTTTCTCAGTTGTTGTTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACTGGTAAATGA 1578 0.4594 MAIYDGPGFRFHPTDEEIICFYLKRKLTGNLPPAFDHFAVIDIYKFEPWDLPSLSKLKTKDLEWYFFTVLDKKYGNSLRLNRATDRGYWKTTGKDRIIKNGKDVVGMKKTLVYHSGRAPRGDRTNWVMHEYKMVNETLARAGMQDTYVLCRVFEKSGSGPKNGEKYGAPFIEAEWEHVGRLVDPVLPVGNELMIQEVFAPASVPALAPAPVLALAPYVGDQVDPLPTVGNESLKQEVSASAPTDDDFVEAKDLDEKFDDTSDTIGNADLASIICYGESSSYPPQHSQTFLSDHKQMEPEFALYDPSVAAAMVDEYLAFPEEDIFQHVCFESSLNVGSESPIANHGQPFVEQNVESDTNNSPLASKHVLEGQSSNEPSFPEGNAEVSNWVSAGDANYFVRQANKLLAHMPASPAFASEFPTVEFAHGISAAAESSSSAHITAGMISITDISFRGNAMDWMVGKNGDFNTIGFTQTDVNSATLVPISDLVCSKTAFMLSHGWVFLVGFSVVVLSLSFKIGSFMYTGK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05022 525 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 284 - -
Vivi1g05022 525 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Vivi1g05022 525 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vivi1g05022 525 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Vivi1g05022 525 MobiDBLite consensus disorder prediction 351 380 - -
Vivi1g05022 525 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05022 Vivi-Chr1 110215617 110219707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05022 313 517 NAC Transcription Factor Family AT5G04410 26.667 4.33e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g05022 NAM 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05022 - - vvo:131643826 853.973