Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05019 ATGTCAGGAGAGGAAATTTGGTCATCTGTTGAAAAAGAATCTAGAAAATCTCTGCCTCCATTTGATAACAGTAGTGGCTACAATTCAAAAACAGGAATATATCACTCTCTTGAAAAGCTTGGCACCAAGCATGAAATCCCAACAGACCAAAACCTTACCACTGCAAGTCTTGTGTTATCACAGTTCCCACAAGCAGAACTTGCTGACGCGAAGATTGCGTTTATTGATTTAAATACTAATCATAGTGTAACCTACGGCGAGCTTCGCCGATCGGTTTACTCGCTTGCAACAGCTTTGTTCCATGGACTTGAGGTTAGAAAAGGCGACATCGTGTTTTTATTGTCTCCGAACTCGACTTTGTACTCGACTATATGCTTAGCTGTGTTATCAATTGGTGCAATTCTTACCACTGCGAATCCTCTCAATACGAAGTCGGAAATTGCGAAACAAGTACGTGATTCGGGTGCTAAACTAGCCATCTCAACACCAGAAGAGTTACACAAACTGGTCCCAACAGGTGTTCCTACACTTCTTACCTCTAGTTCATCTGATGAAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGTTATGATTCGCAAGAGTTGCCGCGTGTTTCTGTGGAACAATCAGACACTGCTGCTATACTTTACTCTTCAGGGACCACAGGAGTAAGCAAAGGTGTTGTTTTGACACATTCAAATCTCGTAACCATTATAAAACTATTCTGCTGGTCTGCTGATATATCAGCATCTCAAGATGATGTTTTCCTCGCCTTCATTCCAATGTTTCACATCTATGGACTCACGTTCTTTGGATTTGGGTTGTTGTGTGTTGGTGTTACAACAGTTTTGATGCAGAAATACAATTTCCAAGCTATGCTTATTGCTATCGAGAAGTACAAAGTTAATAACATACCAGCAGTGCCGCCCGTGATCCACGCGTTGGTGAAACATGCAATCAAAGATGGGTGTGACCTGTCTAGCTTAAGAAGGGTTGGTTCAGGTGCAGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATGTTTCCTTGGGTTGAACTAAGGACAGGGTATGGACTAACGGAAAGTTGTGGGGGAGCATCCTTTTTTGCGTCGGATAAAGACGCTAAAGCTCATCCAGAAGCATGTGGAAAGTTGATTCCGACTTTTTGTGCAAAAGTGATGGACATTGGAACAGGAAAGCCTTTGCCTCCTAACAAGGCAGGAGAGTTATGGCTGAAAAGTGGCACTATTATGAAAGAATATCTAGGAAATATGGAGGCAACAGCTGCAACAGTTGATTCAGAAGGTTGGTTGAGAACAGGTGATCTTGGTTTTATCGATGATAATGGAGTTGTCTGCATAGTTGAACGAATAAAGGAGCTAATCAAGCACAACGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTACTAAGTCATTCCCTAATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCGTATGTGGTGAGAAGATCTGGCTCTCAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCGGGCCAGGTAGCTCCCTATAAGAAAGTGAGAAGAGTGAGTTTTATCGACAATATTCCAAGGTCGGCTGCTGGCAAGATATTGCGCAAGGATCTAGTTTCTCAAAGCAAATATCAACTAGTCTCTAAGTTATGA 1713 0.4215 MSGEEIWSSVEKESRKSLPPFDNSSGYNSKTGIYHSLEKLGTKHEIPTDQNLTTASLVLSQFPQAELADAKIAFIDLNTNHSVTYGELRRSVYSLATALFHGLEVRKGDIVFLLSPNSTLYSTICLAVLSIGAILTTANPLNTKSEIAKQVRDSGAKLAISTPEELHKLVPTGVPTLLTSSSSDEKFLSVEELIEGCYDSQELPRVSVEQSDTAAILYSSGTTGVSKGVVLTHSNLVTIIKLFCWSADISASQDDVFLAFIPMFHIYGLTFFGFGLLCVGVTTVLMQKYNFQAMLIAIEKYKVNNIPAVPPVIHALVKHAIKDGCDLSSLRRVGSGAAPLSKEMSQEFRKMFPWVELRTGYGLTESCGGASFFASDKDAKAHPEACGKLIPTFCAKVMDIGTGKPLPPNKAGELWLKSGTIMKEYLGNMEATAATVDSEGWLRTGDLGFIDDNGVVCIVERIKELIKHNGYQVAPAELESVLLSHSLIVDAAVIPVEDEETGQIPMAYVVRRSGSQLSEDQVIQFVAGQVAPYKKVRRVSFIDNIPRSAAGKILRKDLVSQSKYQLVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05019 570 CDD 4CL 46 558 - -
Vivi1g05019 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Vivi1g05019 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 560 - -
Vivi1g05019 570 SUPERFAMILY Acetyl-CoA synthetase-like 63 561 - -
Vivi1g05019 570 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Vivi1g05019 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Vivi1g05019 570 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Vivi1g05019 570 Gene3D - 41 463 IPR042099 -
Vivi1g05019 570 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g05019 570 Gene3D - 464 566 IPR045851 -
Vivi1g05019 570 Pfam AMP-binding enzyme 69 467 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05019 Vivi-Chr1 110137667 110141132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05019 25 566 Monolignol Biosynthesis Gene Families AT4G05160 42.727 1.08e-147 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05019 K10526 - gmx:100783104 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05019 1 110137667 110141132 Vivi1g05019 1 110137667 110141132 ECH