Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04994 ATGACAGATTTTCAGCCTCTGCAGCAGAAGCCTGAATCTGCTGATTCTCATGCTGATTTTGAGCATGGATTGGAGAACTTTATGCGTGGTCAGTTGGATGATTGTATGTCATTTGCTTCATGTAGTTCTTCCCGGGCACCCGAAGATGAGGACGATGAGAGTGATCAGCTAGTTCGGAGGAGAAGGAGGTCTGATCTTGAAGGGGATGATTTAGCGGAGTCCTCAGCAGCACGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCCGGCAGGCGCAGGAGATGATTACTACTATTGAGAGAAGGAATCGAGAGTCGGAGTTGATGGCGCTTGCAGGGTTACATACGGTGTCTATGTTGGACTCCTCTTTTCTGAGGGGGTCGCAGTCTCCTACTTCCGGCCAGGAGGGGACTGTGGAGAGGCCGAGTACTCAGGCATCTTCTATTCTGCAGATGTGGCGTGAGTTAGAGGATGAACATTTGTTGAATCGGGCACGTGAAAGGATGAGGGAGAGGTTGAGGCAGCAAAGGAGTTCTGATGCTAATACCAATGTGTCTAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAGAGTGAGAATGATTATGGTACCTGGTCACACGATCAGATTGGATCAAGGAATGCACATGTGAGTCGTAACGGGTCTAGCCGAGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCTTCTAATGTGAGCCAGAGAAACAACAACCACAGGTCAGAATGGCTTGGAGAAACAGAGCGTGAAAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGCGGGAGCCGTAGAGATGCTCAAGCAAATGAATCTGCTCAAGCTGCTCGGACCCGTGATATGGCAGCTGACCATGATGAGGGTCAGCCAGAGCATGTTCGGCGCGACATGCTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGCAGATTCCTTCGAAATGAAACTGTTGAAGATGAAAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTACGACAACGGCACACAGTCTCTGGTATAAGGGACGGGTTTCGTTCAAGATTAGAAAATATTGTCCGCGGTCAAGCCAGCACCAATCCTGATGCCACGACAAATAGTAACAATGATGAAACAAGACATGATGAGAACCAATCAATTAATATCGTAGACGCTCAACAAGAAAATCACAACCAAGAGCAGATTAGGGGCCCAGAAACTGATGCACGTCAGTCGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAGGAACAGATTGCCGAAAATAGGGGAGAAGACTGGCAGCAGAGAATTAATGGTCCGTTTAATCAGCTCAGAGCTGGAAGGGAAGCCAGTGATTGGCAACAGGAAACTCCCCGAAATTCAGCCGGAGATGACCCACATCCACAGGAAGCTCAAAGAGTTTGGCAGGACGATAACACAAGGGAAGCTGGTGGTAATTGGCCTGAAGAACCTTCTGCAGCCTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAACAGATTTCATCCTCCTGATGATGATAATGTATACAGCATGGAGCTTAGAGAGCTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGATCAACTGATACAGTCATATGTTGAAAGGCAAGGTCGTGCTCCAGTCGACTGGGATTTGCATCGAAACTTGCCTACAACCACTCCTGCCTCGCCTGAACGAGACCCTGAACAGCAGGGTGATGAACGTAATGAGGGTCAGCATGAAGCAATTAACAGGCCGTCACTAGTGTTTCCTCCTCCACCCGTACCACCGCCACAACCTCTGTGGCACCAAGACTTGCACCAAACTGGATGGTCTCGCCATACCATGCATCGCTCTGAAATCGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGGAAATGGATTGGGTGCCGAGACATCTGATGATGGGTCTAAATGGGCGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGCGATAACCACATTGATTCGCTTTTGTACAGATGCGGACACATGTGCACATGTTCTAAATGTGCGAATGAGTTAATTCGTGGAGGAGGCAAGTGTCCATTATGCCGAGCACCAATTGTTGAGGTGGTCCGCGCATATTCCATACTGTAA 2556 0.4836 MTDFQPLQQKPESADSHADFEHGLENFMRGQLDDCMSFASCSSSRAPEDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGTVERPSTQASSILQMWRELEDEHLLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHVSRNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQANESAQAARTRDMAADHDEGQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIRDGFRSRLENIVRGQASTNPDATTNSNNDETRHDENQSINIVDAQQENHNQEQIRGPETDARQSPNQTGTLESSTSETISWQEASNQGGDWQEQIAENRGEDWQQRINGPFNQLRAGREASDWQQETPRNSAGDDPHPQEAQRVWQDDNTREAGGNWPEEPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPVDWDLHRNLPTTTPASPERDPEQQGDERNEGQHEAINRPSLVFPPPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGGNGLGAETSDDGSKWAHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04994 851 MobiDBLite consensus disorder prediction 469 511 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 432 454 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 537 561 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 297 334 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 39 78 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 652 681 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 571 590 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 539 553 - -
Vivi1g04994 851 Coils Coil 728 748 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 172 245 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 125 147 - -
Vivi1g04994 851 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 851 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 297 318 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 52 78 - -
Vivi1g04994 851 SUPERFAMILY RING/U-box 791 844 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 432 447 - -
Vivi1g04994 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 782 849 IPR013083 -
Vivi1g04994 851 ProSiteProfiles Zinc finger RING-type profile. 799 838 IPR001841 -
Vivi1g04994 851 Pfam Zinc finger, C3HC4 type (RING finger) 796 843 - -
Vivi1g04994 851 CDD mRING-HC-C3HC5_NEU1 796 848 - -
Vivi1g04994 851 MobiDBLite consensus disorder prediction 179 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04994 Vivi-Chr1 109321899 109328547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04994 763 845 C3H Transcription Factor Family AT3G06140 32.530 3.48e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04994 - - gmx:100805607 1408.28