Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04992 ATGATTACTACTATTGAGAGAAGGAATCGAGAGTCGGAGTTGATGGCGCTTGCAGGGTTACATACGGTGTCTATGTTGGACTCCTCTTTTCTGAGGGGGTCGCAGTCTCCTACTTCCGGCCAGGAGGGGACTGTGGAGAGGCCGAGTACTCAGGCATCTTCTATTCTGCAGATGTGGCGTGAGTTAGAGGATGAACATTTGTTGAATCGGGCACGTGAAAGGATGAGGGAGAGGTTGAGGCAGCAAAGGAGTTCTGATGCTAATACCAATGTGTCTAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAGAGTGAGAATGATTATGGTACCTGGTCACACGATCAGATTGGATCAAGGAATGCACATGTGAGTCGTAACGGGTCTAGCCGAGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCTTCTAATGTGAGCCAGAGAAACAACAACCACAGGTCAGAATGGCTTGGAGAAACAGAGCGTGAAAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGCGGGAGCCGTAGAGATGCTCAAGCAAATGAATCTGCTCAAGCTGCTCGGACCCGTGATATGGCAGCTGACCATGATGAGGGTCAGCCAGAGCATGTTCGGCGCGACATGCTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGCAGATTCCTTCGAAATGAAACTGTTGAAGATGAAAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTACGACAACGGCACACAGTCTCTGGTATAAGGGACGGGTTTCGTTCAAGATTAGAAAATATTGTCCGCGGTCAAGCCAGCACCAATCCTGATGCCACGACAAATAGTAACAATGATGAAACAAGACATGATGAGAACCAATCAATTAATATCGTAGACGCTCAACAAGAAAATCACAACCAAGAGCAGATTAGGGGCCCAGAAACTGATGCACGTCAGTCGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAGGAACAGATTGCCGAAAATAGGGGAGAAGACTGGCAGCAGAGAATTAATGGTCCGTTTAATCAGCTCAGAGCTGGAAGGGAAGCCAGTGATTGGCAACAGGAAACTCCCCGAAATTCAGCCGGAGATGACCCACATCCACAGGAAGCTCAAAGAGTTTGGCAGGACGATAACACAAGGGAAGCTGGTGGTAATTGGCCTGAAGAACCTTCTGCAGCCTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAACAGATTTCATCCTCCTGATGATGATAATGTATACAGCATGGAGCTTAGAGAGCTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGATCAACTGATACAGTCATATGTTGAAAGGCAAGGTCGTGCTCCAGTCGACTGGGATTTGCATCGAAACTTGCCTACAACCACTCCTGCCTCGCCTGAACGAGACCCTGAACAGCAGGGTGATGAACGTAATGAGGGTCAGCATGAAGCAATTAACAGGCCGTCACTAGTGTTTCCTCCTCCACCCGTACCACCGCCACAACCTCTGTGGCACCAAGACTTGCACCAAACTGGATGGTCTCGCCATACCATGCATCGCTCTGAAATCGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGGAAATGGATTGGGTGCCGAGACATCTGATGATGGGTCTAAATGGGCGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGCGATAACCACATTGATTCGCTTTTGTACAGATGCGGACACATGTGCACATGTTCTAAATGTGCGAATGAGTTAATTCGTGGAGGAGGCAAGTGTCCATTATGCCGAGCACCAATTGTTGAGGTGGTCCGCGCATATTCCATACTGTAA 2271 0.48 MITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGTVERPSTQASSILQMWRELEDEHLLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHVSRNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQANESAQAARTRDMAADHDEGQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIRDGFRSRLENIVRGQASTNPDATTNSNNDETRHDENQSINIVDAQQENHNQEQIRGPETDARQSPNQTGTLESSTSETISWQEASNQGGDWQEQIAENRGEDWQQRINGPFNQLRAGREASDWQQETPRNSAGDDPHPQEAQRVWQDDNTREAGGNWPEEPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPVDWDLHRNLPTTTPASPERDPEQQGDERNEGQHEAINRPSLVFPPPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGGNGLGAETSDDGSKWAHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04992 756 MobiDBLite consensus disorder prediction 202 238 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 30 52 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 337 352 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 557 586 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 202 223 - -
Vivi1g04992 756 Coils Coil 633 653 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 337 359 - -
Vivi1g04992 756 ProSiteProfiles Zinc finger RING-type profile. 704 743 IPR001841 -
Vivi1g04992 756 Pfam Zinc finger, C3HC4 type (RING finger) 701 748 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 374 416 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 476 495 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 444 458 - -
Vivi1g04992 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 754 IPR013083 -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 442 466 - -
Vivi1g04992 756 CDD mRING-HC-C3HC5_NEU1 701 753 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 77 183 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 164 180 - -
Vivi1g04992 756 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 756 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 143 157 - -
Vivi1g04992 756 MobiDBLite consensus disorder prediction 84 142 - -
Vivi1g04992 756 SUPERFAMILY RING/U-box 696 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04992 Vivi-Chr1 109321899 109328693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04992 668 750 C3H Transcription Factor Family AT3G06140 32.530 2.57e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04992 - - gmx:100805607 1244.57