Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04981 ATGAATTGTCTTCACATTCACAATCTTTCAAGATTGTCTCTTTTACCCTTCCACACACTTGTTACTCCTAATACTCGTCACTACTCTTCTTCTCTTTCCTTCATCCCTAAATCTCCAATCATGTCACTTAAGGCTGCTTCTGGTTCTATACCAAGTGCAGAGAAAAGTAGTAGCTCTGATGTTGAGGAGGTCGTCAAGTCTGAGACATACAGCAATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCTACCAGACTTGATTGTCGGATCATGCTTGCAGACTCCTGAAGATGTTGATAAGCTGCGTAAAATCGGAGTGAAAACTATATTTTGCTTACAACAAGACCCAGACCTAGAATATTTTGGAGTTGACATCAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGCGCTGAGATAAGGGACTTTGATTCATTTGATTTACGGAAGCGGCTTCCTGCTGTAATTAGCAAATTATACAAAGCAGTTAAATCTAATGGAGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGACATATATGTTTTGGATTCTGGGTTATAAACTCAATGAAGCTAATTCACTACTTCTGAGCAAAAGGTCATGCTTTCCAAAACTGGATGCCATAAAAAGTGCAACGGCCGATATTCTTACAGGACTCAGTAAGAAGCCCGTCACTTTGTCATGGGGACACAGCAATTGCTCTAATGTGGAAATTTCTGGACTTGATATTGGATGGGGGCAGAGAGTGCCCTTAGTTTTTGATGACAAACAGGGTTCATGGTTTCTCAAGAAGGAAATGTTTGAAGGGCACTACGAGTACAAGTACATTGTTGATGGTGAATGGACATGCAATAATGACGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTGATGTCGTTGATGATGCCGATGGTGATCGTGCATCTCTTCGGGAGAGAGTGACTGGTGATGATCCCAATCTCACAGAAGATGAACGAAACAAAATAATAGAGTTTCTGGAAGCATCTCCCGATGAGGATCTCTGA 1122 0.4127 MNCLHIHNLSRLSLLPFHTLVTPNTRHYSSSLSFIPKSPIMSLKAASGSIPSAEKSSSSDVEEVVKSETYSNNMTEAMGAVLTYRHELGMNYNFILPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDSFDLRKRLPAVISKLYKAVKSNGGVTYIHCTAGLGRAPAVALTYMFWILGYKLNEANSLLLSKRSCFPKLDAIKSATADILTGLSKKPVTLSWGHSNCSNVEISGLDIGWGQRVPLVFDDKQGSWFLKKEMFEGHYEYKYIVDGEWTCNNDELITSPNKDGHVNNFIDVVDDADGDRASLRERVTGDDPNLTEDERNKIIEFLEASPDEDL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04981 373 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 84 261 - -
Vivi1g04981 373 Gene3D Protein tyrosine phosphatase superfamily 84 364 IPR029021 -
Vivi1g04981 373 ProSiteProfiles Dual specificity protein phosphatase domain profile. 91 248 IPR020422 GO:0006470|GO:0008138
Vivi1g04981 373 CDD DSP_laforin-like 90 237 IPR045204 GO:0019203
Vivi1g04981 373 Pfam Glycogen recognition site of AMP-activated protein kinase 250 334 IPR032640 -
Vivi1g04981 373 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 246 336 - -
Vivi1g04981 373 Gene3D Immunoglobulins 246 336 IPR013783 -
Vivi1g04981 373 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 39 370 - -
Vivi1g04981 373 SMART dsp_5 91 241 IPR020422 GO:0006470|GO:0008138
Vivi1g04981 373 Pfam Dual specificity phosphatase, catalytic domain 134 229 IPR000340 GO:0008138|GO:0016311
Vivi1g04981 373 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 226 IPR000387 GO:0016311|GO:0016791
Vivi1g04981 373 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 233 IPR029021 -
Vivi1g04981 373 CDD E_set_AMPKbeta_like_N 250 331 - -
Vivi1g04981 373 SUPERFAMILY E set domains 249 332 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04981 Vivi-Chr1 109006016 109012108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04981 90 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.014 3.52e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04981 - - mtr:25484855 626.706