LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g04972	ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGGTCAAGATTCAACGGACTTCTTCCTCTTCCAATGGCGCTGGGATTGTTCAGAGATCCAAAAGCTTTGTTTTTAGGGCTCCTCAGGAGAATTACACCATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCCTATTCTAAGGTTGTGAGGGCAAAGAAGAAAGACACAGGAGTTGTGTATGCATTGAAGATCATGGACAAAAAGTTTATCACCAAAGAGAACAAAACTGCATATGTGAAGTTGGAACGCATAGTGCTAGATCAATTGGAACATCCTGGCATTGTGCGGCTATATTTCACATTTCAAGACTCATTTTCTCTGTACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATTACCAGGAAAGGCCGTCTAACTGAGGAGGAGGCACGGTTCTATGCAGCTGAAGTTGTTGATGCTCTTGAATACATACATGGTTTGGGAGTGATACATCGTGACATTAAGCCAGAGAACTTATTACTCACAGCTGAAGGACATATTAAAATAGCTGATTTTGGGAGTGTGAAGCCAATGCAAGATAGCCAAATTACAGTCCTTCCAAATGCAGCATCAGATGACAAAGCCTGCACATTTGTCGGAACAGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCTTCTCCCGCAACTTTCGGAAATGATCTCTGGGCACTTGGCTGCACATTATACCAAATGCTTTCTGGAACTTCTCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCAAGAGAAATTCGATTTCCAGATTACTTTTCCGACGAAGCCAGAGACCTTATTGATCGGCTATTGGATTTAGACCCGAGCAGGAGACCAGGTGCAGGACCTGATGGTTACGCAATTTTGAAGATACATCCCTTTTTCAAGAAGGTTGTCTGGGATAACTTAAGGACACAAACTCCTCCAAAACTTGCTCTAGAACCCGGGACTCAATCGCCTGTTGCCGATGATGTTCAGGAGTCATCATGGAGTCCTTCTCACATCGGCGACGGTTCTGCAGCTTCTGCTAGACAGCCTGATGGCACTGCATCGTCTTCAGAAGGAACCGGTTCTATAACCAGGCTAGCTTCAATTGATTCCTTTGATTCAAAATGGCAACAATTTTTGGATCCCGGGGAATCTGTTCTTATGATCTCCATGGTGAAGAAATTACAAAAAATAACAAGCAAGAAGGTTCAGCTCATCCTTACCAACAAGCCGAAGTTGATCTATGTGGACCCTTCAAAATTAATTGTAAAGGGAAATATAATATGGTCTGATAATCCAAACGATTTAAGCATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCTAAAAAGGTTATGTCGTTTGAGGATGCTAAGCAAAGAGCATCTATATGGAAAAAGGCAATTGAAGGACTTCAAAACCGGTGA	1479	0.4192	MLEMEKDFDSKVKIQRTSSSSNGAGIVQRSKSFVFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGVVYALKIMDKKFITKENKTAYVKLERIVLDQLEHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLTEEEARFYAAEVVDALEYIHGLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPSRRPGAGPDGYAILKIHPFFKKVVWDNLRTQTPPKLALEPGTQSPVADDVQESSWSPSHIGDGSAASARQPDGTASSSEGTGSITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKITSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDAKQRASIWKKAIEGLQNR	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g04972	492	SUPERFAMILY	Protein kinase-like (PK-like)	26	334	IPR011009	-
	Vivi1g04972	492	Gene3D	Transferase(Phosphotransferase) domain 1	131	327	-	-
	Vivi1g04972	492	Pfam	PH domain	389	491	IPR033931	-
	Vivi1g04972	492	FunFam	3-phosphoinositide-dependent protein kinase 2-like	131	329	-	-
	Vivi1g04972	492	Gene3D	-	368	492	IPR011993	-
	Vivi1g04972	492	SUPERFAMILY	PH domain-like	308	491	-	-
	Vivi1g04972	492	PANTHER	SERINE/THREONINE-PROTEIN KINASE	30	343	-	-
	Vivi1g04972	492	MobiDBLite	consensus disorder prediction	340	376	-	-
	Vivi1g04972	492	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
	Vivi1g04972	492	MobiDBLite	consensus disorder prediction	328	376	-	-
	Vivi1g04972	492	FunFam	3-phosphoinositide-dependent protein kinase 2-like	45	130	-	-
	Vivi1g04972	492	CDD	STKc_PDK1	45	314	IPR039046	GO:0004674
	Vivi1g04972	492	Coils	Coil	472	492	-	-
	Vivi1g04972	492	SMART	serkin_6	47	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04972	492	FunFam	3-phosphoinositide-dependent protein kinase 1	363	492	-	-
	Vivi1g04972	492	ProSiteProfiles	Protein kinase domain profile.	47	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04972	492	Pfam	Protein kinase domain	49	300	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi1g04972	492	Gene3D	Phosphorylase Kinase; domain 1	45	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g04972	Vivi-Chr1	108851500	108857882	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g04972	1	492	AGC Kinase Gene Family	AT3G10540	81.707	0.0	822

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_PDK1	Vivi1g04972		Pkinase	2.6e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g04972	K06276		-	gmx:100788780	899.812