Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04957 ATGAATTCAATTTCAGATATAATTGCAGACGTGGTGCTCTCAAGTGTCAAGATTTTGTTTCCAACGCCAACATTCCGGGCTCTGTTGAATCGCCTTTCGTTATCCAATCTGGGCCTCAGAGGTACAGCAGCTACAGCTTCTTCTGGTCCTCCCATTGACTCCAACCGCATCCATAGCTATAAATATGATGTGTTTATTAGTTTCAGTGGTGCTGATACCCGCAACACTTTCGTTGATCATCTTTATGCTCATTTAATTAGAAAGGGTATTTTTGCCTTCAAGGATGATATAAGGCTACAGAAAGGAGAGTCCCTTTCGCCACAACTTGTACAAGCAATTGCAAATTCGCGAGTTTCTATTGTTGTTTTTTCTCAAAATTATGCTCAGTCAACATGGTGTTTGGAAGAAATGGCTACTATTGCTGAATGTCGTAGAGATTTGAAACAAACTGTGTTTCCAATTTTTTATGATATCGATCCATCTCATGTACGAAAACAGAATGGGGTGTACCAGAATGCGTTTGTGTTACACATGGAGAAATTTAAAAATAATCCCAATAAGGTTGAGAGATGGAAGAGTGCTATGTTCGATTTAACTGAAGTAGTTGGTTGGGATGTTAGGAACAAGCCAGAGTTTCGAGAAATTAAAAATATTGTTCAGGAAGTGATAAAAACATTGGGTCATAAATTCTCAGGGTTTACGGATGACCTTATTGGGATACAACCTCAAGTAGAAGCATTAGAAAGTCTTTTGAAATTAAGCTCAGAGAATGATGAATTCCGAGTTGTAGGTATTTGGGGGATGGCTGGAATCGGAAAGACAACTCTCGCTTCTGTCTTATATGATAGAATCTCCTATCAGTTTGATGCATGTTGTTTTATTGAGAATATAAGCAAAATTTATAAAGAGGGTGGTGCTACTGCTGTACAGATACAAATCCTTCGGCAAACCATAGATGAAATAAATCTAGAGACATACAGTCCTTCTGAAATATCTGGAATTATAAGTAATCGGCTATGCAGAAGAAAGATTCTTGTAGTTCTTGACAATGCTGATCTATTAGAGCAACTGGAAGAATTGGCTATAAATCCTGAGTTGCTTGGCACGGGAAGCAGAATGATCATTACAACTAGGGATATGCATATTCTAAGAGTGTTTGGAGCACAGTTATCAGTCTCTCACGATACACGTGTGTCGTATGATGTGTATGAGGTTCCACTATTAAATAACAAAGATGCTTGCGAATTATTTTACAGAAAGGCTTTTAAAAGTAAGAATCCCACTAGCGAATGTGTGGAGCTGACTCCAGAGGTACTAAACTATGCTCAAGGTCTGCCAATAGCAGTTCGAGTAGTGGGTTCTTTCTTATGTACTCGAAATTCTAGCCAGTGGAAAGATGCCTTGGATAGATTGAGGAGTAATCCAGACAAAAAAATTATGGATGTGCTTCTGGTTGGTTTTGAGGGATTACATTCTGAGGAAAAAGAAATATTTCTGCATATTGCTTGTTTCTTTAAGGGGGAGAAGGAAGATTATGTGAAGCGAATTTTAGATGCTTGTGATTTGCACCCTGTCATTGGAATTCAAAGTTTGGTTGAGAGGTCACTTATAACTATTAGAAATCAGGAAATTCATATGCATGATATGTTGCAAGAATTGGGGAAGAAAATTGTCCGACAACAGCTTCCTGACGAACCAGGATCTTGGAGTAGATTGTGGCTTTATGAGGATTTCTACAATGTCATGATGACAGAAACGGGAACAAACAAGGTTAAAGCCATAATTCTAGATCAAAAGGGGCAAAGTTCTGAATACCCTCTGTTGAGGGCTGAAGGATTGTCAATAATGAGGGGACTTAAAATTCTTATATTACATCAAAAGAAATTTTCAGGAAATCTGGATTTTCTTTCCAACAGTTTGCAGTATCTTCTGTGGTATGGTTACCCTTTTGCTTCTTTGCCATTAAATTTTGAGCCGTTTCGTCTTGTTGAATTGAATATGCCTTGTAGCTTCATCCAACGACTATGGGACGGTCACAAGGATCTCCCTTGTTTGAAAAGGGTGGATCTGAGCAGCTCTAAATGTCTTGTGGAGACACCAAGTTTTGCAGGAAGCCGGAGACTTGAGCGGCTAGATCTTACAGGATGCATAAGCCTATCGTATGTCCATCCATCCATTGGACTTCTGGAAAAACTTGTTTTCTTGAGTTTGGAAGGGTGCAGCAGTCTGGTCAGGCTCGTTCTTGATGGTGACACTGCATTTAACTTATATTCTCTCAAAGTTTTGCACCTGTCTGGCTGCACAAAACTTGAAACCACGCCTGATTTTACGGAGATGTCAAATCTTGAGTATCTTGATATTGATCAGTGTACGGGTTTATCGACGATTGATCAATCGATTGGGGATCTTACACATCTTAAGTTCTTGAGTTTAAGAGACTGCACAAATCTTGTCAGTATGCCCAAAAGCATTAGTTCTATAATACCATCTCTCGTAACTTTAGACTTATGTGGCTGCTTAAAATTAGAGAATCTACCCTTGGAGGAAATATCACTGCCTGCAGAAATTATTGACCACTTTGATGAAGTTATCATATCTTTGATTTTTTTGGACCTAAGCTTCTGCACTCTCAGTACAGTCCCCGATTCTATTGCAGAGTTAAGGAATTTAGAAAGGCTAAATCTTGAAGGAAATAACTTCAAATCACTACCATCTTCAATAGGGATGCTTTCCAGACTAGCACATTTAAATATGGCGCATTGCAGCAGGCTTCAATCTTTGCCTGAGCTCCAATTGTGTGCTACATCTTCATCTGGGGGAAACTATTTTAAATTGTTGTCAGGATCTCATAATCATAGGTCGGGATTATATATTTTCAATTCTCCCCTCTTGGAGAACTCAGAAGGAAGTCATAACTTGGCATTTTGGTGGCTGAAAAAATTAGTTGAGAAACCTTGTCACTTCCGGTGTGGCCTAGACATTGTTGTTCCTGGATACTCATTTCCACGGTGGTTTCGTCGTCAAATTAAGGGAGATTCAACAATTAGGATAGCAGGCTATGGAAATGAGTTTGACAATTGGCTTGGCTTTGCCTTTGGTGTTGCATTTGTGGAAAACTGTCGCCCAGCAACATCCGGATCTTCACATTATTCATTGTCGTCACAGCTTCCCTATCCTCTTTATCTCTCTTTTGAAAGTGAACAAACGGAAGAAACCTTTGATATGCCGCTTCGGTTAGACCTGAGCAAGGTTGATGGCTCAAACACAGAACATCTTTGGCTAATCTATATCTCTAGGCCCCATTGCCATTTTCTAACAACAGGAGCACGGATCACGTTTAAAGCTCACCCAAATGTGAAGTTGAAAACATGGGGATTACGCATGGTATTCGAGCACGATATCTCCAGTTCATCCGAGTTGTGGACAAATGAGATTCATCAACAAGGAGGTTTTCACTTGGATCATGTATATGAAAGTAGCAGCAGCAGGAGTCCTGAAGTCCAGCTTCGTTATAAATGGTACATTACTGAGGAAAAGTCTAAAATGCAGGATCGTTATTGGTACATTACTGAGGAAGAGGAAAAGTCTAAAATGCAGCTTCCTTATAATTGGTACATTACCGAGGAAGAGGAAAAGTTTAAAATGCAGCTTCGTTATAATTGGCATGTTACCAAGGAAGACGAAAACGAGAATAGGGAAGTGAATATGAAACAAAATCATCTCTCAAATATGGGCCTTAACACGTAG 3747 0.3942 MNSISDIIADVVLSSVKILFPTPTFRALLNRLSLSNLGLRGTAATASSGPPIDSNRIHSYKYDVFISFSGADTRNTFVDHLYAHLIRKGIFAFKDDIRLQKGESLSPQLVQAIANSRVSIVVFSQNYAQSTWCLEEMATIAECRRDLKQTVFPIFYDIDPSHVRKQNGVYQNAFVLHMEKFKNNPNKVERWKSAMFDLTEVVGWDVRNKPEFREIKNIVQEVIKTLGHKFSGFTDDLIGIQPQVEALESLLKLSSENDEFRVVGIWGMAGIGKTTLASVLYDRISYQFDACCFIENISKIYKEGGATAVQIQILRQTIDEINLETYSPSEISGIISNRLCRRKILVVLDNADLLEQLEELAINPELLGTGSRMIITTRDMHILRVFGAQLSVSHDTRVSYDVYEVPLLNNKDACELFYRKAFKSKNPTSECVELTPEVLNYAQGLPIAVRVVGSFLCTRNSSQWKDALDRLRSNPDKKIMDVLLVGFEGLHSEEKEIFLHIACFFKGEKEDYVKRILDACDLHPVIGIQSLVERSLITIRNQEIHMHDMLQELGKKIVRQQLPDEPGSWSRLWLYEDFYNVMMTETGTNKVKAIILDQKGQSSEYPLLRAEGLSIMRGLKILILHQKKFSGNLDFLSNSLQYLLWYGYPFASLPLNFEPFRLVELNMPCSFIQRLWDGHKDLPCLKRVDLSSSKCLVETPSFAGSRRLERLDLTGCISLSYVHPSIGLLEKLVFLSLEGCSSLVRLVLDGDTAFNLYSLKVLHLSGCTKLETTPDFTEMSNLEYLDIDQCTGLSTIDQSIGDLTHLKFLSLRDCTNLVSMPKSISSIIPSLVTLDLCGCLKLENLPLEEISLPAEIIDHFDEVIISLIFLDLSFCTLSTVPDSIAELRNLERLNLEGNNFKSLPSSIGMLSRLAHLNMAHCSRLQSLPELQLCATSSSGGNYFKLLSGSHNHRSGLYIFNSPLLENSEGSHNLAFWWLKKLVEKPCHFRCGLDIVVPGYSFPRWFRRQIKGDSTIRIAGYGNEFDNWLGFAFGVAFVENCRPATSGSSHYSLSSQLPYPLYLSFESEQTEETFDMPLRLDLSKVDGSNTEHLWLIYISRPHCHFLTTGARITFKAHPNVKLKTWGLRMVFEHDISSSSELWTNEIHQQGGFHLDHVYESSSSRSPEVQLRYKWYITEEKSKMQDRYWYITEEEEKSKMQLPYNWYITEEEEKFKMQLRYNWHVTKEDENENREVNMKQNHLSNMGLNT 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04957 1248 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 62 745 IPR044974 GO:0006952
Vivi1g04957 1248 Gene3D Ribonuclease Inhibitor 862 956 IPR032675 -
Vivi1g04957 1248 Gene3D Ribonuclease Inhibitor 569 751 IPR032675 -
Vivi1g04957 1248 Pfam TIR domain 61 229 IPR000157 GO:0007165
Vivi1g04957 1248 Gene3D - 407 491 IPR042197 -
Vivi1g04957 1248 SMART till_3 61 201 IPR000157 GO:0007165
Vivi1g04957 1248 Gene3D - 233 391 IPR027417 -
Vivi1g04957 1248 FunFam Disease resistance protein (TIR-NBS-LRR class) 58 228 - -
Vivi1g04957 1248 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 204 IPR035897 -
Vivi1g04957 1248 Gene3D Ribonuclease Inhibitor 752 861 IPR032675 -
Vivi1g04957 1248 ProSiteProfiles TIR domain profile. 60 226 IPR000157 GO:0007165
Vivi1g04957 1248 Pfam NB-ARC domain 251 476 IPR002182 GO:0043531
Vivi1g04957 1248 SUPERFAMILY L domain-like 546 965 - -
Vivi1g04957 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 501 IPR027417 -
Vivi1g04957 1248 PRINTS Disease resistance protein signature 442 456 - -
Vivi1g04957 1248 PRINTS Disease resistance protein signature 754 770 - -
Vivi1g04957 1248 PRINTS Disease resistance protein signature 262 277 - -
Vivi1g04957 1248 PRINTS Disease resistance protein signature 338 352 - -
Vivi1g04957 1248 Gene3D - 58 232 IPR035897 -
Vivi1g04957 1248 ProSiteProfiles Leucine-rich repeat profile. 889 910 IPR001611 GO:0005515
Vivi1g04957 1248 Pfam Leucine Rich Repeat 662 678 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04957 Vivi-Chr1 108447135 108461164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04957 752 929 WRKY Transcription Factor Family AT4G12020 32.402 6.70e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04957 - - vvo:131643801 2464.49