Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04956 ATGAATGCTCTCAATTCTCGTTTAAGCAAAGACTTCATGCCAACCGATGATGAACTTCTTCAAAAGTTTCTCTACAACAAAATTAACAATAAACCAATTCCCGATTATCTCAACATTATCGAACATGATTTGTTTGGTACTAATAAGAATCCGTTGGATATATGGAATGAGTTTGAAGCTTCGTTCTCATATGGCGGAAAAGACCTATATTTCTTTACTACCTTAAAGAAGAAATCTGCTACAAGCACACGCTCCGTTCGCACTATTGGCAGTGGTAATTGGGAAGGCGAAGACACCGGAAAAAATATATTTGCCAAAGACACGGACCAACTCCTCGGTTTAAAAAAACGTTATCGTTTTGAGAGGAGTAACACTCCTCAAGATGGTGGATGGATCTTGCACGAATATAACCTCCACAAATCTTTGGTTAACAATACTCCGGTCAACAATTATGTTCTATGCAGATTTAGAAAGAATTTGAAATCGAAATCAAAAAATACACAAGCAAAATCAAGTATAGGTGATCAATCCAATTCTCATTTAAGAAATATTTCACGAATAAAAAATTGTTCTGCACAAGAGAGTAAAGAAAGAGAACCTATCATTCATAAACAAGAAGAATCTGTCATTCCTAAACAAATAGAACCACTCATATCAGGAAATGATGTTTTGGTGAAAAAATATATTATTTATGAAGAAGCAATAACTCAATCAAATGATGGTGGAAACGAGAAAAAATATGGGGATGATGATGATGATGAGATGTCTTGTCCTGAATATTTTGCAAAGAATCTGTTGGAAATTAATGGAGGAGAAGGGTTCATAAAAGAAGACGATGTTCAAATACTTAACAATAATTCTCATAAGCATTCTTCAAATAAACAAATTGGTTATAAAATTGGTTTCATTTACATGAAAAACATATATGAGACTAACATAGCAACATGGCCATTGGAGCAATACTATCAGCAACTGACTCAGTACATTAGAGGTTCTCAGTCAAGATGA 1008 0.3393 MNALNSRLSKDFMPTDDELLQKFLYNKINNKPIPDYLNIIEHDLFGTNKNPLDIWNEFEASFSYGGKDLYFFTTLKKKSATSTRSVRTIGSGNWEGEDTGKNIFAKDTDQLLGLKKRYRFERSNTPQDGGWILHEYNLHKSLVNNTPVNNYVLCRFRKNLKSKSKNTQAKSSIGDQSNSHLRNISRIKNCSAQESKEREPIIHKQEESVIPKQIEPLISGNDVLVKKYIIYEEAITQSNDGGNEKKYGDDDDDEMSCPEYFAKNLLEINGGEGFIKEDDVQILNNNSHKHSSNKQIGYKIGFIYMKNIYETNIATWPLEQYYQQLTQYIRGSQSR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04956 335 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vivi1g04956 335 PANTHER NAC TRANSCRIPTION FACTOR 56 12 197 - -
Vivi1g04956 335 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Vivi1g04956 335 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Vivi1g04956 335 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04956 Vivi-Chr1 108441257 108443423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04956 12 163 NAC Transcription Factor Family AT3G15510 32.738 6.98e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g04956 NAM 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04956 - - vvo:131620211 545.043