Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04946 ATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACGAAACAGAGACGTGCAATATATGATGCACTACTGAAGTGTACGAAGCCAACCGTATTATGGGATCTTTATGCTTTTATGCCCGGGCCTTCCAGTTTTCAGAACACTTCTCCGTTGGTGCGCTTATTAGATGAATATTTTCGACTTATTGGCAAAGTTTCTCATCATGCTTCATTGGACATGATTGAAAGCGGGTCCTTCACCTTGTCAAATGAGTTATGGAGAATAAGTGGTGTGAATTCCAGTTATACAATGTGCCAGAATTATCCATTTGCTTTGGTTGTTCCAAAGAGCATTAGTGATGATGAAGTGCTCCAGGCTTGCAAATTCCGCGCAAGATGCCGACTGCCTGTAATTTCTTGGTGTCATCCTGTTACTGGCGCAGCTCTTGCACGTTCTTCCCAGCCTTTAGTTGGTCTTATGAGGAATATGAGGAGCAACCTGGATGAAAAACTCGTGGCTGCACTATGCAGCAACCTTGATGGCTCAAGGAGAAAACTATATATCGCTGATGCAAGACCAAAGAAAAATGCAATAGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGGTTATATTTTTTGGGATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGTAGAACATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCAATATGGGGTGGCGGCAATTTAAGCAGTATGTCTGCTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTGTTGCACATTCAGAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCTCGTATTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGACGGATGGGATAGGACAAGCCAGTTAGTTTCACTTGCTAATTTGTTGCTTGATCCGTACTATCGGACATTTAAAGGGTTCCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCGTTTTCTGATCGTGTGGGGACACCATCTATCTCTGAATGTGGCAACGTGTCTTTCGAGTTATCTAGGCAACAGTCTTCAACTAGCATCCCATCATCACCCATGCACCAGTCATCAGGGACATTCACGTCTCAACCTCCAACTTCATCTCATGCACATAACTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGCTGATTGTGTGTCACAAGTGATGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGCTCTCTTCTCGCTTTGGAAACTTCTTCTTTAATAGTGAGAAGGAGAGGCTGCAGTGCAATATTTTTGAAAGTTGTGGATGTGTATGGGCATACCTGGCTGATAGGCGGAGATCAGAAGGAGCTTCCCATGTGCACTGTAATCCCTTTTATGAACCACTGAAGTACAATGGGCCTCTTCTCCCCCCTGCAGCAGCGTTAGCCCCAACTTTATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAGAGTGGAGAGATTGAAGCACAATGTAGGAAGATAAAGCTGAAAAATCATGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAACTTAGAGAAAATACAAATACTATAGAATCGTTGAATGCTGAATTGCGTCGTGAGAAACTGTTAAACATCTCAGCTATGACCAAGTCGAAAAGGATAATAAAAGAAAACACAGACATAAAGCGAGCAATTCAGTCAATTGGGTGCAAGATTCACATTTCTAATAGTGGTGATTGCATTCTTGACATTGAAAACAACCCAGAGAATGCAGTTCAAAAGTTGCATTTTTCCTCTAGGCAAGTATCAAGTAGTGCTGTGATTAACGACAAAAAGGATATATCTCTTTCGGTAACAGAAGATGATGAAGGAAACAATGTTATTAGTCGAATTTGTGAAACTCTATGCCCTTTTCGCAGTAGAGATGGAGGCTGCATGTGGCCAAATGGTGCTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTTTGAAGGCAAATTTTGATGCATTTGACCGGCTTTCGATTGATGACAGTTATTTCAAGCCCAAGTAA 2136 0.4293 MRIIVFGFRPRTKQRRAIYDALLKCTKPTVLWDLYAFMPGPSSFQNTSPLVRLLDEYFRLIGKVSHHASLDMIESGSFTLSNELWRISGVNSSYTMCQNYPFALVVPKSISDDEVLQACKFRARCRLPVISWCHPVTGAALARSSQPLVGLMRNMRSNLDEKLVAALCSNLDGSRRKLYIADARPKKNAIANGAMGGGSESSSNYFQSEVIFFGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHIQNVLAGAAWIAARIAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFKGFQALVEKDWLAFGHPFSDRVGTPSISECGNVSFELSRQQSSTSIPSSPMHQSSGTFTSQPPTSSHAHNSNNYSPIFLQWADCVSQVMRMYPFAFEFSAAFLVDFLDCMLSSRFGNFFFNSEKERLQCNIFESCGCVWAYLADRRRSEGASHVHCNPFYEPLKYNGPLLPPAAALAPTLWPQFHLRWACPEEAQSGEIEAQCRKIKLKNHEMQKAKEVAERKLRENTNTIESLNAELRREKLLNISAMTKSKRIIKENTDIKRAIQSIGCKIHISNSGDCILDIENNPENAVQKLHFSSRQVSSSAVINDKKDISLSVTEDDEGNNVISRICETLCPFRSRDGGCMWPNGACAQLGSQFVGLKANFDAFDRLSIDDSYFKPK 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04946 711 PANTHER MYOTUBULARIN-RELATED 1 642 IPR030564 -
Vivi1g04946 711 Pfam Myotubularin-like phosphatase domain 46 454 IPR010569 -
Vivi1g04946 711 MobiDBLite consensus disorder prediction 371 397 - -
Vivi1g04946 711 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 79 517 IPR029021 -
Vivi1g04946 711 ProSitePatterns Tyrosine specific protein phosphatases active site. 301 311 IPR016130 GO:0016311|GO:0016791
Vivi1g04946 711 ProSiteProfiles Myotubularin phosphatase domain. 62 513 IPR010569 -
Vivi1g04946 711 Coils Coil 531 572 - -
Vivi1g04946 711 CDD PTP-MTM-like 125 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04946 Vivi-Chr1 108160436 108173883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04946 1 711 Protein tyrosine phosphatase (PTP) family AT3G10550 67.549 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04946 K18081 - gmx:100781842 1120.53