Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04945 ATGGACTTGCCAAGACACCGTGCCACACCATCAACCTCTCTAAGGGACACATCAGACTCCTCCACTGGTAGCTGGGATGCCATCGAATGGACCAAAATTGAGCCAATTGCGCGCTTTGTCTCTCATGCCAATCTGGATTTCTTGCTTGAGGATGAACAAGTTATGGCAGAAGGACATGGTGTCGTTCTTGTCAATACAGATGATGCAGGCGTGTTGATTGTAACAAACTTTCGTGTAATATTTTTGAGTGAGGGAACTAGAAAAGTTATTGCCCTGGGAACAATACCACTAGCAACCATTGAGAAGTTTAACAAGACAGCAGTTAAGGTTCAGTCAAATACTCGGCAGTTAGACAAGACACCAACACAAAGACTGCTGCAGGTGATTGGGAAAGATATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACGAAACAGAGACGTGCAATATATGATGCACTACTGAAGTGTACGAAGCCAACCGTATTATGGGATCTTTATGCTTTTATGCCCGGGCCTTCCAGTTTTCAGAACACTTCTCCGTTGGTGCGCTTATTAGATGAATATTTTCGACTTATTGGCAAAGTTTCTCATCATGCTTCATTGGACATGATTGAAAGCGGGTCCTTCACCTTGTCAAATGAGTTATGGAGAATAAGTGGTGTGAATTCCAGTTATACAATGTGCCAGAATTATCCATTTGCTTTGGTTGTTCCAAAGAGCATTAGTGATGATGAAGTGCTCCAGGCTTGCAAATTCCGCGCAAGATGCCGACTGCCTGTAATTTCTTGGTGTCATCCTGTTACTGGCGCAGCTCTTGCACGTTCTTCCCAGCCTTTAGTTGGTCTTATGAGGAATATGAGGAGCAACCTGGATGAAAAACTCGTGGCTGCACTATGCAGCAACCTTGATGGCTCAAGGAGAAAACTATATATCGCTGATGCAAGACCAAAGAAAAATGCAATAGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGGTTATATTTTTTGGGATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGTAGAACATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCAATATGGGGTGGCGGCAATTTAAGCAGTATGTCTGCTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTGTTGCACATTCAGAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCTCGTATTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGACGGATGGGATAGGACAAGCCAGTTAGTTTCACTTGCTAATTTGTTGCTTGATCCGTACTATCGGACATTTAAAGGGTTCCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCGTTTTCTGATCGTGTGGGGACACCATCTATCTCTGAATGTGGCAACGTGTCTTTCGAGTTATCTAGGCAACAGTCTTCAACTAGCATCCCATCATCACCCATGCACCAGTCATCAGGGACATTCACGTCTCAACCTCCAACTTCATCTCATGCACATAACTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGCTGATTGTGTGTCACAAGTGATGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGCTCTCTTCTCGCTTTGGAAACTTCTTCTTTAATAGTGAGAAGGAGAGGCTGCAGTGCAATATTTTTGAAAGTTGTGGATGTGTATGGGCATACCTGGCTGATAGGCGGAGATCAGAAGGAGCTTCCCATGTGCACTGTAATCCCTTTTATGAACCACTGAAGTACAATGGGCCTCTTCTCCCCCCTGCAGCAGCGTTAGCCCCAACTTTATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAGAGTGGAGAGATTGAAGCACAATGTAGGAAGATAAAGCTGAAAAATCATGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAACTTAGAGAAAATACAAATACTATAGAATCGTTGAATGCTGAATTGCGTCGTGAGAAACTGTTAAACATCTCAGCTATGACCAAGTCGAAAAGGATAATAAAAGAAAACACAGACATAAAGCGAGCAATTCAGTCAATTGGGTGCAAGATTCACATTTCTAATAGTGGTGATTGCATTCTTGACATTGAAAACAACCCAGAGAATGCAGTTCAAAAGTTGCATTTTTCCTCTAGGCAAGTATCAAGTAGTGCTGTGATTAACGACAAAAAGGATATATCTCTTTCGGTAACAGAAGATGATGAAGGAAACAATGTTATTAGTCGAATTTGTGAAACTCTATGCCCTTTTCGCAGTAGAGATGGAGGCTGCATGTGGCCAAATGGTGCTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTTTGAAGGCAAATTTTGATGCATTTGACCGGCTTTCGATTGATGACAGTTATTTCAAGCCCAAGTAA 2532 0.4321 MDLPRHRATPSTSLRDTSDSSTGSWDAIEWTKIEPIARFVSHANLDFLLEDEQVMAEGHGVVLVNTDDAGVLIVTNFRVIFLSEGTRKVIALGTIPLATIEKFNKTAVKVQSNTRQLDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRAIYDALLKCTKPTVLWDLYAFMPGPSSFQNTSPLVRLLDEYFRLIGKVSHHASLDMIESGSFTLSNELWRISGVNSSYTMCQNYPFALVVPKSISDDEVLQACKFRARCRLPVISWCHPVTGAALARSSQPLVGLMRNMRSNLDEKLVAALCSNLDGSRRKLYIADARPKKNAIANGAMGGGSESSSNYFQSEVIFFGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHIQNVLAGAAWIAARIAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFKGFQALVEKDWLAFGHPFSDRVGTPSISECGNVSFELSRQQSSTSIPSSPMHQSSGTFTSQPPTSSHAHNSNNYSPIFLQWADCVSQVMRMYPFAFEFSAAFLVDFLDCMLSSRFGNFFFNSEKERLQCNIFESCGCVWAYLADRRRSEGASHVHCNPFYEPLKYNGPLLPPAAALAPTLWPQFHLRWACPEEAQSGEIEAQCRKIKLKNHEMQKAKEVAERKLRENTNTIESLNAELRREKLLNISAMTKSKRIIKENTDIKRAIQSIGCKIHISNSGDCILDIENNPENAVQKLHFSSRQVSSSAVINDKKDISLSVTEDDEGNNVISRICETLCPFRSRDGGCMWPNGACAQLGSQFVGLKANFDAFDRLSIDDSYFKPK 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04945 843 ProSitePatterns Tyrosine specific protein phosphatases active site. 433 443 IPR016130 GO:0016311|GO:0016791
Vivi1g04945 843 PANTHER MYOTUBULARIN-RELATED 19 774 IPR030564 -
Vivi1g04945 843 CDD PTP-MTM-like 257 547 - -
Vivi1g04945 843 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 649 IPR029021 -
Vivi1g04945 843 SUPERFAMILY PH domain-like 48 170 - -
Vivi1g04945 843 MobiDBLite consensus disorder prediction 503 529 - -
Vivi1g04945 843 Coils Coil 663 704 - -
Vivi1g04945 843 Gene3D - 59 158 IPR011993 -
Vivi1g04945 843 Pfam Myotubularin-like phosphatase domain 178 586 IPR010569 -
Vivi1g04945 843 SMART gram2001c 37 107 IPR004182 -
Vivi1g04945 843 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g04945 843 ProSiteProfiles Myotubularin phosphatase domain. 194 645 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04945 Vivi-Chr1 108156036 108173883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04945 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 66.550 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04945 K18081 - gmx:100781842 1332.78