Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04892 ATGTCTCAGACTGTTGTTCTCAAAGTTGGTATGTCATGTGAAGGATGTGTTGGAGCAGTGAAGAGAGTTCTGGGAAAATTGGATGGTGTGGAATCATATGACATTGATTTGAAGGAACAGAAAGTGGTAGTGAAAGGAAATGTTGAACCAGATACAGTTCTAAAGACAGTTTCCAAAACTGGGAAGCCGACTGCGTTTTGGGAAGGCGAAGCATCATCTGAGACTAAGTAA 231 0.4156 MSQTVVLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVEPDTVLKTVSKTGKPTAFWEGEASSETK 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04892 76 CDD HMA 10 63 IPR006121 GO:0046872
Vivi1g04892 76 SUPERFAMILY HMA, heavy metal-associated domain 1 67 IPR036163 GO:0046872
Vivi1g04892 76 FunFam Copper transport protein ATOX1 1 70 - -
Vivi1g04892 76 ProSiteProfiles Heavy-metal-associated domain profile. 2 65 IPR006121 GO:0046872
Vivi1g04892 76 Gene3D - 1 65 - -
Vivi1g04892 76 Pfam Heavy-metal-associated domain 7 62 IPR006121 GO:0046872
Vivi1g04892 76 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 4 67 IPR045181 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04892 Vivi-Chr1 106257046 106260045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04892 1 76 Primary Pumps ATPases AT1G63440 25.316 4.88e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04892 K07213 - gmx:100799342 138.272