Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04881 ATGTCATATACAAACATGGAACTTCTGTCTCTCTCCTTCACATTCACCAAATCTCAAACCTTTCCCTCTCTCAAACAACCAATTCACCATCTTCCATTAACCACAACACTACCCAACAAAACCATTCTTTCATCATCTTCTTCTTTTTCCATTTCATGTAATTCCTCTTTTACCAGAATCTCAGCAACGAATACCCAACCATCCATTTCACAAACCGATATGTTGTTCCCTGCGGGAAATTCAAAGCATTGGATTGTTAGAATGGATAAGCCTGCTGTTGGTGTTGTTTCCAAAGCTCAGATTGTTGATCATTATGCTCAAATTTTGACAAAGGTTATGGGAAATGAAAAAGATGCACAGATGTGTTTATATCATGTTTCTTGGAAAACCAACTTTGGGTTTTGTTGTGAAATTGATGAGGACTGTGCACATGAGTTAGCTGGTGTTCCTGGTGTCTTGTCAGTTCAGCCAGACCACAATTTTGAGTCTGAAAATAAGAATTATGAAGGTAGAAACTTGGAAAATAGACTGAATGTGCCTAATTCTTTGGAAGAAACTCAGGAAACTTCTGTAAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTAATCATAGATAAAATTTCAAAAAGGTCAAAGGGTTATGCATTTATTGAATATGCCACAGAAGAGGCTGCAAGTGCCGCACTCAAAGAGATGAATGGAAAGATTATTAACGGCTGGATGATAGTGGTAGATGCTGCCAAGACTACCCCGGCAAGATACAACAAAGGTCGCGCCAGACCATCTGCTTGA 861 0.3856 MSYTNMELLSLSFTFTKSQTFPSLKQPIHHLPLTTTLPNKTILSSSSSFSISCNSSFTRISATNTQPSISQTDMLFPAGNSKHWIVRMDKPAVGVVSKAQIVDHYAQILTKVMGNEKDAQMCLYHVSWKTNFGFCCEIDEDCAHELAGVPGVLSVQPDHNFESENKNYEGRNLENRLNVPNSLEETQETSVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYATEEAASAALKEMNGKIINGWMIVVDAAKTTPARYNKGRARPSA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04881 286 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 16 263 IPR039206 GO:0016554
Vivi1g04881 286 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 71 161 IPR037045 -
Vivi1g04881 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 262 IPR000504 GO:0003723
Vivi1g04881 286 SUPERFAMILY RNA-binding domain, RBD 186 282 IPR035979 GO:0003676
Vivi1g04881 286 FunFam Organelle RRM domain-containing protein 1, chloroplastic 71 161 - -
Vivi1g04881 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Vivi1g04881 286 SMART rrm1_1 195 268 IPR000504 GO:0003723
Vivi1g04881 286 Gene3D - 162 286 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04881 Vivi-Chr1 106063850 106067132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04881 185 279 C2H2 Transcription Factor Family AT2G19380 31.579 1.02e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04881 - - vvo:131613880 565.844