Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04868 TCTTATATATTCAGACCATCATGTTCGTGGTTGGTGGACAAAAGTAGCATTGCAGCCAAAATATGGCATGCATCTGGAGCAACCGAGAGAGTTATATCGGGAAGCAATCCAACTATAGCTTGCCCAAATTGTCAACATGTTATTGACAACCGTAAAGTAACACAAGAGTGGCCTGGATTACCTATAGGTGTTAAATTTGATCCATCTGATCAAGAAATAATGTTGCACTTACTTGCAAAAGTTGGCCAAGAAAACTTAAAATCCCACCCTCTCATCGACGAATTTATCCCTACTATTGATATGGACGAGGGTATCTGTTATACTCATCCTCGATATTTACCAGGTGTTGCACTAGACGGAAGTGTTTCGCACTTTTTCCATAGAGCGGTAAAAGCTTATAATTCTGGCAGTCGAAAGCGTCGAAGAGTAAATGGTCAAGATGATTTAAGTTATGTCCGCTGGCACAAGACCGGAAAGACTAAGCCGATTCTTTTGAACGGGGTTCAAATAGGAAGTAAAAAGATTATGGTTCTCTATTCGACTCAGGATTCATCTGGTAAAACTAATTGGATTATGCATCAGTATCATCTTGGGACGAAAGAGAATGAAAAGCATGGAGAGTACGTTGCATCGAAAGTCTTTTACCAGCAGCCGGAGCATGTCAAACTGCGGGGCAAAGGTGATCAGGATATTCGTCACACCGCTGAAAAAGAGAGTCCTGTCACTCCCAATGTTGTTACTCTTGAGCCTAATCGGTTCAAAAAGCAATGCTCGGATATCGACCAAGCACAACAATCTCATCATACTCCTGAGACTCTGCTAAGCCTTCCTGAGTTAGAAAGTCCGTTATTTGGTACTCGGGATGACAATGATGAGCTTGCGAATATAGATATGTCGATGTATATGTCGATGTTAGAAACTCCGATTAATGAAGGGATAGATGACATTGACCTGTCACAGTATCTATTAGACTCACAAGAATTTGCAGAAACATTTCCCTCGTTTAAGGATTTGCTTCCAGGCCAGTCTCCGAATAGGGATGGAGAAAACGGAGAACATAATGAGCAACATAGTCTTGCTACATGTGCTCATCTAGGACAAGACCAGTTGAACAACAATATTGAAGATTACCAAAATCTTGACCTGGACACTGCAAAGAAGAACGATATTGAAGATTACCAAAATCTTAACCTTGATATTGCAAACAAGAACTATATCGAAGATAACCAAAATCTTGACCTTGACTTTGCAAACAAGAACTATATCGAAGATAACCAAAATCTTGACCTTGACTTTGCAAACATGAACGGTATCGAAGATTACCAAAATCTTGGCCTTGACTTTGCAAACATGAACGGTATCGAAGATTACCAAAATCTTTGCCTTGACTTTGCAAACATGAACGGTATTGAAGATTACCAAAATCTTGGCGTTGACTTTGCAAACATGAACGGTATCGAAGATTACCAAAATCTTGGTGTTGACATTGCAAAGAACGATATCGAGGACTACCTAAATCTTGAACTTGACTCACCAACCACCGATTTTGGATTAAGTCATCTGGACTTCGATTCGCAGGATAGCTATCTTGCTTGGGATGGTTACAAGAAATTCAACTAA 1620 0.4006 SYIFRPSCSWLVDKSSIAAKIWHASGATERVISGSNPTIACPNCQHVIDNRKVTQEWPGLPIGVKFDPSDQEIMLHLLAKVGQENLKSHPLIDEFIPTIDMDEGICYTHPRYLPGVALDGSVSHFFHRAVKAYNSGSRKRRRVNGQDDLSYVRWHKTGKTKPILLNGVQIGSKKIMVLYSTQDSSGKTNWIMHQYHLGTKENEKHGEYVASKVFYQQPEHVKLRGKGDQDIRHTAEKESPVTPNVVTLEPNRFKKQCSDIDQAQQSHHTPETLLSLPELESPLFGTRDDNDELANIDMSMYMSMLETPINEGIDDIDLSQYLLDSQEFAETFPSFKDLLPGQSPNRDGENGEHNEQHSLATCAHLGQDQLNNNIEDYQNLDLDTAKKNDIEDYQNLNLDIANKNYIEDNQNLDLDFANKNYIEDNQNLDLDFANMNGIEDYQNLGLDFANMNGIEDYQNLCLDFANMNGIEDYQNLGVDFANMNGIEDYQNLGVDIAKNDIEDYLNLELDSPTTDFGLSHLDFDSQDSYLAWDGYKKFN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04868 539 Gene3D NAC domain 69 220 IPR036093 GO:0003677|GO:0006355
Vivi1g04868 539 SUPERFAMILY NAC domain 45 216 IPR036093 GO:0003677|GO:0006355
Vivi1g04868 539 MobiDBLite consensus disorder prediction 336 355 - -
Vivi1g04868 539 Pfam No apical meristem (NAM) protein 61 197 IPR003441 GO:0003677|GO:0006355
Vivi1g04868 539 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 9 366 IPR044799 GO:0003700
Vivi1g04868 539 ProSiteProfiles NAC domain profile. 60 216 IPR003441 GO:0003677|GO:0006355
Vivi1g04868 539 FunFam NAC domain-containing protein 8 69 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04868 Vivi-Chr1 105612080 105615707 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04868 12 221 NAC Transcription Factor Family AT1G28470 51.351 4.97e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g04868 NAM 3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04868 - - vvo:131613840 1115.14