Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04865 ATGGAGTTAGGAGGAGGTACTTGCACAGATGAAACCACCACCACCACCACCACCACCACAAGCAATGACTCTCTTTCGATATCTCTTTTACCGGCGAAACAATCTCCACCGCCGCCGATGAACACACTCAGCCGCGTTGGAAGCGGTGCTAGCGCTGTTACCGATCCTGAAAACTGTGTCGGCTCCGGCGAAGCCGAATCTCGTAAACTCCCGTCGTCGAAATACAAAGGCGTGGTTCCACAGCCGAATGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGAGTCTGGCTTGGTACGTTCAATGAAGAAGACGAAGCCGCCAGAGCGTACGACATCGCCGCCTTGAGATTCCGTGGAAAAGACGCTGTCACGAACTGTAAGAGCCTCGGCGGCGTAGAAAACGACACCGACGAAGGTGAAGCCGAGTTTCTCAACTCGCATTCCAAATCCGAGATCGTCGACATGCTTCGGAAACATACGTACGACGACGAGCTTAAGCAGAGCATGCGTGAGTCCTGTGGCGGAAGGCAGCGGCGCAACGGAGAATCTGCTACAGCGTCACGTGGCGCGTGCGATGCTAAGGCGCGTGAGCAGTTGTTTGAGAAAACCGTTACGCCAAGTGACGTTGGAAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTAAATGCTGTTGCCGTAACTGTCTCCGGCGATGGCATCTCGCCGTCGGTGGCGGCGGCGAAGGGTTTGCTATTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGATTTCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTAACCAAAGGCTGGAGCCGGTTCGTTAAGGAGAAGAATCTCAAAGCCGGTGATGCGGTTCGGTTCTTCCGGTCGACCGGACCGGATAGACAGCTCTACATAGACTGCAAAGCCAGGAGCATTAGTGTTGTCGGCGTCAGTATTGGTGAAACCAATAATAATAATACTGGTGGTTTGTTTATTCCGGTCCGACCGGTAGTTGAACCGGTTCAAATGGTTCGGCTTTTTGGGGTAAATATTTTGAAAATACCTGGTTCAGGTTCTGATGGTGTTGTTGGCGTTAGCTGCAATGGGAAGAGGAAAGAGATGGAATTATTTTCCTTAGAATGCAGCAAAAAGCAAAAGATAATTGGAGCTTTATGA 1197 0.5088 MELGGGTCTDETTTTTTTTTSNDSLSISLLPAKQSPPPPMNTLSRVGSGASAVTDPENCVGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNCKSLGGVENDTDEGEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRESCGGRQRRNGESATASRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVTVSGDGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVRFFRSTGPDRQLYIDCKARSISVVGVSIGETNNNNTGGLFIPVRPVVEPVQMVRLFGVNILKIPGSGSDGVVGVSCNGKRKEMELFSLECSKKQKIIGAL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04865 398 ProSiteProfiles B3 DNA-binding domain profile. 202 318 IPR003340 GO:0003677
Vivi1g04865 398 Gene3D - 191 325 IPR015300 -
Vivi1g04865 398 SMART rav1_2 74 135 IPR001471 GO:0003700|GO:0006355
Vivi1g04865 398 MobiDBLite consensus disorder prediction 1 76 - -
Vivi1g04865 398 FunFam AP2 domain-containing protein RAP2.8 73 130 - -
Vivi1g04865 398 MobiDBLite consensus disorder prediction 7 31 - -
Vivi1g04865 398 SUPERFAMILY DNA-binding pseudobarrel domain 200 314 IPR015300 -
Vivi1g04865 398 CDD B3_DNA 201 303 IPR003340 GO:0003677
Vivi1g04865 398 Gene3D AP2/ERF domain 73 130 IPR036955 GO:0003700|GO:0006355
Vivi1g04865 398 Pfam B3 DNA binding domain 202 308 IPR003340 GO:0003677
Vivi1g04865 398 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Vivi1g04865 398 ProSiteProfiles AP2/ERF domain profile. 74 129 IPR001471 GO:0003700|GO:0006355
Vivi1g04865 398 SUPERFAMILY DNA-binding domain 73 127 IPR016177 GO:0003677
Vivi1g04865 398 CDD AP2 73 127 IPR001471 GO:0003700|GO:0006355
Vivi1g04865 398 SMART B3_2 202 317 IPR003340 GO:0003677
Vivi1g04865 398 MobiDBLite consensus disorder prediction 171 192 - -
Vivi1g04865 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 69 374 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04865 Vivi-Chr1 105408480 105409968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04865 7 398 B3 DNA Binding Superfamily AT1G25560 58.272 2.31e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vivi1g04865 B3 9.1e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04865 K09287 - gmx:100789009 528.865