Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04862 ATGATACCATTCGGAGCGGAGTTAAACAAGGATGTCCTAAAAGTCTCCCGAGAATTAGGAAAGTACCAAGAAGCCGCAAACCTTGAATTTCATCATCAAAAACCATCATGTTCGTGGTTGGTGGACAAAAGTAGCATTGCAGCCAAAATATGGCATGCATCTGGAGCAACCGAGAGAGTTATATCGGGAAGCAATCCAACTACAGCTTGCCCAAATTGTCAACATGTTATTGATAACCGTAGAGTAACACAAGAGTGGCCTGGACTACCTAGAGGTGTTAAATTTGATCCATCTGATCAAGAAATAATGTTGCACTTACTTGCAAAAGTTGGCCAAGAAAACTTAAAATCTCACCCTCTCATCGACGAATTTATCCCTACTATTGATATGGACGAGGGTATCTGCTATACTCATCCTCGATATTTACCAGGTGTTGCACTAGACGGAAGTGTTTCGCACTTTTTCCATAGAGCGGTAAAAGCTTATAATTCTGGCAGTCGAAAGCGTCGAAGAGTAAATGGTCAAGATGATTTAAGTTATGTCCGCTGGCACAAGACCGGAAAGACTAAGCCGATTCTTTTGAACGGGGTTCAAATAGGAAGTAAAAAGATTATGGTTCTCTATTCGACTCAGGATTCATCTGGTAAAACTAATTGGATTATGCATCAGTATCATCTTGGGACGAAAGAGAATGAAAAGCATGGAGAGTACGTTGCATCGAAAGTCTTTTACCAGCAGCCGGAGCATGTCAAACTGCGGGCCAAAGGTGATCAGGATATTCGTCACACCGCTGAAAAAGAGAGTCCTATCACTCCCAATTCTGTGGCTGGTGAGCCTCATCGGTTCATAAAGCAACGCTCGGATATGGACCAAGCTCAAGAATCTCATCATACTCCTGAGACTCAGGTAAACCTTCCTGAGTTAGAAAGTCCGATATTTGGTAGTCGGGATGACAATGATGAGCTTGCAAATATAGATATGTCGATGTATAGGTCGATGTTAGAAACTCCGATTAATGAAGGGATAGATGACATTGACCTGTCACAGAACCTATTAGATTCACAAAAATTTGCGGAAGCATTTCCCTCGTTTAAGGATTTGCTTCCAGGCCAGTCTCTGAATAGGGATGGAGAGCATAATGAGCAACATAGTCTTGCTACATGTGCTCATCTAGGACAAGACCAGTTGAAGAACAATATTGAAGATTACCAAAATCTTGACCTGGACACTGCAAAGAAGAACGATATCGAAGATTACCAAAATCTTAACCTTGATATTGCAAACAAGAACTATATCGAAGATAACCAAAATCTTGACCTTGACTTTGCAAACATGAACGGTATCGAAGATTACCAAAATCTTGACCTTGACTTTGCAAACATGAACGGTATCGAAGATTACCAAAATCTTGGCCTTGACTTTGCAAACATGAACGGTATCGAAGATTACCAAAATCTTGACCTTGACTTTGCAAACATGAACGGTATCGAGGACTACCTAAATCTTGAACTTGACTCACCAACTACCGATTTTGGATTAAGTCATCTGGACTTCGATTTGCAGGATAGCTATCTTGCTTGGGATGGTTACAAGAAATTCAACTAA 1605 0.4093 MIPFGAELNKDVLKVSRELGKYQEAANLEFHHQKPSCSWLVDKSSIAAKIWHASGATERVISGSNPTTACPNCQHVIDNRRVTQEWPGLPRGVKFDPSDQEIMLHLLAKVGQENLKSHPLIDEFIPTIDMDEGICYTHPRYLPGVALDGSVSHFFHRAVKAYNSGSRKRRRVNGQDDLSYVRWHKTGKTKPILLNGVQIGSKKIMVLYSTQDSSGKTNWIMHQYHLGTKENEKHGEYVASKVFYQQPEHVKLRAKGDQDIRHTAEKESPITPNSVAGEPHRFIKQRSDMDQAQESHHTPETQVNLPELESPIFGSRDDNDELANIDMSMYRSMLETPINEGIDDIDLSQNLLDSQKFAEAFPSFKDLLPGQSLNRDGEHNEQHSLATCAHLGQDQLKNNIEDYQNLDLDTAKKNDIEDYQNLNLDIANKNYIEDNQNLDLDFANMNGIEDYQNLDLDFANMNGIEDYQNLGLDFANMNGIEDYQNLDLDFANMNGIEDYLNLELDSPTTDFGLSHLDFDLQDSYLAWDGYKKFN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04862 534 ProSiteProfiles NAC domain profile. 89 245 IPR003441 GO:0003677|GO:0006355
Vivi1g04862 534 MobiDBLite consensus disorder prediction 286 318 - -
Vivi1g04862 534 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 38 400 IPR044799 GO:0003700
Vivi1g04862 534 Pfam No apical meristem (NAM) protein 90 226 IPR003441 GO:0003677|GO:0006355
Vivi1g04862 534 Gene3D NAC domain 98 249 IPR036093 GO:0003677|GO:0006355
Vivi1g04862 534 FunFam NAC domain-containing protein 8 98 249 - -
Vivi1g04862 534 SUPERFAMILY NAC domain 74 245 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04862 Vivi-Chr1 105279113 105287033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04862 41 250 NAC Transcription Factor Family AT1G28470 51.802 1.77e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g04862 NAM 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04862 - - vvo:131613840 934.095