Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04838 ATGATGCCCCCTGAGCAAGAAACAAGTATTAATGCACCAATTAACAACTCACCCAACACAAATAGAACAGAGAGTAGCTCCATCCATGGCGAGCCCGAAGGTTCTTCTTCGAACAAAGTTAAACCTAGTTTGGATATCGATCGCAACGCCATTAATATTCCTTCTCAACCAACTACACCATCAACAACATTTTCTATTCTTCCACAATCCCTGAAACCAATTACCCTCAAATTTGAAGATGTTTCATACAGCATAACCTTAACAAACCAAAACAAAAACGGTTGCGTTTCGGGAAAAGAATCAAAGGTAACAAGAAAAGTACTAAACGGAGTCACCGGAATAGCGAGACCCGGCGAGTTAACGGCAATGTTAGGTCCCTCAGGGAGCGGCAAGACCACCTTACTAACCGCCCTAGCCGGAAGACTCACCGGAAAAGTCACCGGCACAATAACATACAACGGAAACTCAGACTCAAACTGCATGAAACGCAAGATAGGGTTTGTTTCACAAGACGACGTCGTTTACCCTCACCTAACAGTGTTGGAAACGCTAACCTACACTGCTCTGTTGCGCCTTCCGAAAACTCTCACCAGAGAAGAGAAAGTAGAACACGCGGAGAGGATAATCACCGAGCTCGGCCTTACGCGGTGTCGAAACAGTCCGGTTGGTGGGTGTATGGCGCTTTTCCGGGGAATCTCCGGCGGGGAGAGGAAACGGATGAGTATTGCGCAAGAGATGTTGGTGAACCCGAGTTTGTTGTTGTTAGATGAACCGACTTCCGGTTTGGACTCAACCACGGCTCAACTTATTGTTTCGGTTCTTAGGGGACTGGCCCGGTCCGGTCGAACCGTTGTGACTACTATTCATCAGCCTTCAAGCCGGTTGTATAGGATGTTTGATAAAGTGGTGGTTTTGTCTGATGGGTACCCGATTTATAGCGGTAACGCGGGTCGGGTTATGGATTATCTTGGATCCGTTGGCTTTGTTCCGGGTTTCAACTTTGTTAATCCTGCTGATTTTCTCCTTGACCTTGCTAATGGCATAGTCGCTGATGTGAAACATGATGATGAGATAGAACAACATAATCAAGATCAAGCTTCAGTAAAACAGTCACTAATTTCATCCTACAAGAAAAACTTATACCCTGCTCTTAAAGAAGATATTCAGAAGAGCAACATTGAATCATCAGTTTTTGCATCAGGAGGAACATCTCGACGTTCTTCTGATAACCAATGGAGCACTGGCTGGTGGGAACAATTCAGGATTCTGCTCAAGAGAGGTTTACAAGAAAGGAGACATGAATCTTTTTCCGGCTTAAAGATTTTCCAAGTGTTGTCTGTTTCTATTCTATCCGGACTCCTTTGGTGGCACTCTGATCCTTCACACATTCAAGATCAGGTAGGACTTCTATTCTTCTTCTCGATCTTTTGGGGATTCTTCCCTCTCTTTAATGCAATCTTTGCATTTCCGCTAGAGAAACCAATGCTAACAAAAGAAAGATCATCAGGCATGTACCATCTCTCTTCCTACTATGTTGCTAGGATGGTAGGAGACTTACCAATGGAGCTTGTTCTTCCGACTATTTTCGTAACCATCACCTATTGGATGGGTGGTCTTAAGCCTTCTCTTGTAACATTCGTGTTAACCCTTTTGATCATGCTTTTCAATGTTCTAGTCTCTCAAGGAATAGGCTTAGCACTTGGTGCAATCCTAATGGATGTTAAGCAAGCCACAACGCTGGCTTCAGTGACAATGTTGGTTTTTCTATTAGCCGGTGGTTACTACATTCAGAAAATGCCTTCTTTTATAGCTTGGTTAAAGTACCTTTCTTTCAGTCACTACTGTTATAAGCTGCTTGTAGGGGTGCAGTATTCGGAAAATGAAGTGTATGAATGTCAACAAGGGTTGCGCTGTCGGGTAAGAGATTTTCCGGCGATAAAGTGTTTGGAGCTTGATGATACTATGTGGGGAGATGTGGCTGCATTGGCAGTGATGTTTGTTGGATTCAGAATCGTTGCGTATTTAGCTTTAAGGATGGGGCAGCCTAAACGCCAAAAGACTTAA 2064 0.4399 MMPPEQETSINAPINNSPNTNRTESSSIHGEPEGSSSNKVKPSLDIDRNAINIPSQPTTPSTTFSILPQSLKPITLKFEDVSYSITLTNQNKNGCVSGKESKVTRKVLNGVTGIARPGELTAMLGPSGSGKTTLLTALAGRLTGKVTGTITYNGNSDSNCMKRKIGFVSQDDVVYPHLTVLETLTYTALLRLPKTLTREEKVEHAERIITELGLTRCRNSPVGGCMALFRGISGGERKRMSIAQEMLVNPSLLLLDEPTSGLDSTTAQLIVSVLRGLARSGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGNAGRVMDYLGSVGFVPGFNFVNPADFLLDLANGIVADVKHDDEIEQHNQDQASVKQSLISSYKKNLYPALKEDIQKSNIESSVFASGGTSRRSSDNQWSTGWWEQFRILLKRGLQERRHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLEKPMLTKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYLSFSHYCYKLLVGVQYSENEVYECQQGLRCRVRDFPAIKCLELDDTMWGDVAALAVMFVGFRIVAYLALRMGQPKRQKT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04838 687 ProSitePatterns ABC transporters family signature. 232 246 IPR017871 GO:0005524|GO:0016887
Vivi1g04838 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 326 IPR027417 -
Vivi1g04838 687 MobiDBLite consensus disorder prediction 8 43 - -
Vivi1g04838 687 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 332 IPR003439 GO:0005524
Vivi1g04838 687 Pfam ABC-2 type transporter 418 624 IPR013525 GO:0016020|GO:0140359
Vivi1g04838 687 Pfam ABC-2 type transporter 289 352 IPR043926 GO:0140359
Vivi1g04838 687 Gene3D - 70 326 IPR027417 -
Vivi1g04838 687 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g04838 687 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 41 674 - -
Vivi1g04838 687 SMART AAA_5 117 310 IPR003593 GO:0016887
Vivi1g04838 687 FunFam ABC transporter G family member 22 95 326 - -
Vivi1g04838 687 CDD ABCG_EPDR 73 314 - -
Vivi1g04838 687 Pfam ABC transporter 109 260 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04838 Vivi-Chr1 103953066 103956913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04838 106 308 Calmodulin-binding Proteins AT2G36910 30.516 1.22e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04838 K05681 - gmx:100783696 1092.03