Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04824 ATGAAAAACAAACAACAAGAAAAAATAATAGCCATGAGTGAAGAATGTGTTGGAAACACTATTGCTACTACCTCTACTACACCATTAAACTGGTGGTATCTTCAAGCAACAAACTCTCTTTCTTCTAATTGGAATGATGGTAATAAACTTGCATGGAACAATCAAATGAATAATCCGAATTCTTCGTCTTCTTGTGATGATCAAGATATATCGGTTTCTTCGAATTCTTTCACTAATGCTTCCAATCATTCGTCTCTCACTGTTGAATCCTCTCGAAGAATACTTGAGTCCCATGCACCTTCCTCTAATGACTTCATGGCTGAACATGCTTCAGATAACCAACTTTGGAGTCATGTTTTATCAGGTGTTGGATCAAATGGAGAGTTACAAAACAACCAAGAAATTGGAGAAAATTTCTTGGATGGACTTTCATCCAAAACCATGTTTGATGAACCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAATTGGGAGTATAGTGGTTCAACTTCATTCAACACAAGTTTTGAAAAGCACTTAAATGGCTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAACTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACTTATCCAATAATTTGAATTCCAATTCCTCCAATATAGATAATCATCACTTTGAATCTGACCCTAATTGTCATCTCAAACAATTACCTTTTGGAGATTCTATTGGAGGAGTAGGTAATAAAATGTTCTCTAATTGCCATGATGTTCAAGACATCAATAAGGTTAAGCAAGAATATCATCATCAACATCATCATGCAAATCATGAAGTATTTGGAAAATCATTTATGAATCCAAATGGATATCTTGATGGATTTAATAATAGTCTTAATCCAGTGGGAGAAAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGCACCAAAAGTTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAAGGCCACTAATTGGAATCCATGCACAAAGACCTAGCATGAAATACTCAAACTTATCCGAGTCAAGGAAGCAAGGACTTCATACACCATCACATATGAGAACTAGTAGCGGAAGAGAGGGGACAACGCGCGAAGTCAAGAAGAAAAGATCCGAAGAATCATCCGAAGCAAACTTGAAGAAGCCAAAACAAGATACATCAACAACTAATTCATCTTCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGAAAAGATCACAGCTCTTCAACAAATTGTGTCTCCTTTTGGAAAGACAGATACAGCATCTGTGCTGTTTGAAGCAATAGGATACATAAAGTATCTTGAAGAACAAGTCCAGTTATTGAGCAACCCTTACTTGAAGGCAAATTCACACAAGTTAATGCAGGATCCAAGGGGAATGTACTTCGATAGAAAAGATAAGGACGATGCGAAAATCGATCTTCGAAGCAGAGGTCTTTGTTTAGTTCCAACTTCATGTACTCCTTTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTCTGTATAGGTAA 1614 0.3674 MKNKQQEKIIAMSEECVGNTIATTSTTPLNWWYLQATNSLSSNWNDGNKLAWNNQMNNPNSSSSCDDQDISVSSNSFTNASNHSSLTVESSRRILESHAPSSNDFMAEHASDNQLWSHVLSGVGSNGELQNNQEIGENFLDGLSSKTMFDEPACDYLKKLDTTNWEYSGSTSFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNLSNNLNSNSSNIDNHHFESDPNCHLKQLPFGDSIGGVGNKMFSNCHDVQDINKVKQEYHHQHHHANHEVFGKSFMNPNGYLDGFNNSLNPVGENGKFYQGLPNISPCTKSFSDVISFNSRFGRPLIGIHAQRPSMKYSNLSESRKQGLHTPSHMRTSSGREGTTREVKKKRSEESSEANLKKPKQDTSTTNSSSSKVQAPKVKLGEKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKLMQDPRGMYFDRKDKDDAKIDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04824 537 MobiDBLite consensus disorder prediction 360 425 - -
Vivi1g04824 537 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 130 515 - -
Vivi1g04824 537 MobiDBLite consensus disorder prediction 360 382 - -
Vivi1g04824 537 MobiDBLite consensus disorder prediction 406 423 - -
Vivi1g04824 537 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 412 461 IPR011598 GO:0046983
Vivi1g04824 537 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 427 475 IPR036638 GO:0046983
Vivi1g04824 537 MobiDBLite consensus disorder prediction 383 405 - -
Vivi1g04824 537 CDD bHLH_AtbHLH_like 427 469 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04824 Vivi-Chr1 103489048 103492653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04824 332 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 42.857 3.87e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04824 - - vvo:131641542 1038.87