Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04823 ATGGCAACAAATAGATTCATATGTGAGGTTTGCAACAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAGGAGAAAGGTTTATCTGTGTCCTGAGCCAACATGTGTTCATCACGATGCTTCAAGAGCTCTGGGAGATCTCACTGGGATTAAAAAGCATTACTCGCGTAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCGAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCATTCAAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCATTAGCACAAGAGAGTGTAATAAGACACCCTAACCCTTTTGGTACTCATCCACATTTCCATGCCACAAACCACATGACTTTAGGTCAAATTTCTCAACAATTGCAACTTCATCAAAACCAAACATCATCCACTAACAACAACATTCTGCGCCTTGGATCATCGGCGCCAAAGTTCGAGCAACACTTAATCTCATCGCCACCGTTAAATCACTCTACTTCATCATTTGGACAATACTCAGTTCCGTCTTCTTCATCGCCGTTCTTCAATATGAGTGACATTCCAAATCAATCCTTTGAAGAACACCAAGGACAATTCTCAAACAAGCCACAACAACTACATGGTCTAATGCAACTTCCTGATCTTCAAGGAAACGCGACAAGTAATAACTCGAACAATCTTTTCAACCTCATGAGTAATATCCATGATGATCAATTCAACAACAGTCCTCTTATTAGTGATCATCCTCATCAATCACTCTTTATGGTCAATTCGAATATGCAACAACATGATCATCAAAACCAAAACCAAAACCTGTCTAGTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTTCTCAAATTGGTTCAACTAATTCAACCAACAACAACAAAGGTACTACTACTACAACTACCACATCTTTTGGAAATAGAAGTAGTCCAAGTATGGAACTAAATGATCATAACAACAATGATGAACTTCATGGATTGATAAACTCTATGGCCAATGGAAATGGAAACACATCCTCCTTATTTGGCAATGAAAACAACCTTAATATAAGGTTTGGTGAATCTGATAAGTTAACATTAGATTTTCTTGGTGTTGGTGGAATGGTCAGAAACATAAGTGGTGCTGGATTCTCACAAAATGAACAACAACAACAACATGCAATGGCTTCTTTGAATCAAAACCTAAAATCATCTCAGGCTCAGTCAAGTCAACATTTTGGAAGCTCAAATTTGATGCAGTGA 1368 0.3904 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVIRHPNPFGTHPHFHATNHMTLGQISQQLQLHQNQTSSTNNNILRLGSSAPKFEQHLISSPPLNHSTSSFGQYSVPSSSSPFFNMSDIPNQSFEEHQGQFSNKPQQLHGLMQLPDLQGNATSNNSNNLFNLMSNIHDDQFNNSPLISDHPHQSLFMVNSNMQQHDHQNQNQNLSSPHMSATALLQKASQIGSTNSTNNNKGTTTTTTTSFGNRSSPSMELNDHNNNDELHGLINSMANGNGNTSSLFGNENNLNIRFGESDKLTLDFLGVGGMVRNISGAGFSQNEQQQQHAMASLNQNLKSSQAQSSQHFGSSNLMQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04823 455 Coils Coil 423 443 - -
Vivi1g04823 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Vivi1g04823 455 FunFam Zinc finger protein MAGPIE 2 29 - -
Vivi1g04823 455 Gene3D Classic Zinc Finger 6 44 - -
Vivi1g04823 455 SMART c2h2final6 6 28 IPR013087 -
Vivi1g04823 455 SMART c2h2final6 47 77 IPR013087 -
Vivi1g04823 455 SMART c2h2final6 82 102 IPR013087 -
Vivi1g04823 455 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Vivi1g04823 455 MobiDBLite consensus disorder prediction 435 455 - -
Vivi1g04823 455 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Vivi1g04823 455 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vivi1g04823 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 439 IPR031140 -
Vivi1g04823 455 Gene3D Classic Zinc Finger 45 130 - -
Vivi1g04823 455 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Vivi1g04823 455 MobiDBLite consensus disorder prediction 328 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04823 Vivi-Chr1 103450162 103453603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04823 1 414 C2H2 Transcription Factor Family AT2G02080 48.055 1.02e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04823 zf-C2H2_jaz 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04823 K25870 - gmx:102663407 482.256