Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04796 ATGGGTGGGAGCGAGAACTCGAAGGCTATGGTCGTGAATCGTTTGTCTGATTCCGTCAGGGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGCAAGAGGATGTATGGGAATTTGATCCGTAGGGTGAAGCTTCTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGACCCTTTGTGATCAACAGCTTGAAGCTTTTGAAGCTTTAAGGGTTGCTTTGGATTTGGCTATGATCCTTCTAAAGTCTATTAACCAAGGAAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATGCAGCGGATGAGTTCCAACAAGTAACTGGAAAAATTGAAGCTGCATTGAGTGATATTTCATACAAAAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAATTGGTGCATGCTCAGTTCAAAAGAGCCAAAGCTCAAACGGAATTCGCTGATTTACAACTAGATTTGGATATGGCTGTAGCACTGAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTTTCCGAGAAGTTGCATCTAAGGACTATAAATGATTTAAAGAAAGAGTCTAGTGAATTGCACGAATTGGTCATAGCAAGCAATGGAGAATTAGCGGACAGTTTTGAAACAGTCTCGTCTCTTCTTAGGAAACTGAAGGACTGGGTGCTCACTGAAAATCCGGAGGTTGATAATGCATATGAGAACGAGAAAGTGTCAATTAAGCACCGGTCTCCTGTAATCCCGGATGATTTTCGATGTCCTATATCGCTTGAACTAATGAAAGATCCTGTAATTGTATCTACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACCGAACTTGCCCTAAAACACAACAAACACTTTTGCATACAGCCCTTACTCCTAACTATGTTTTGAAGAGTCTGATTGGTCTATGGTGCGAAAGCAATGGTGTTGAGCTACCAAAGAAGCAAGGTAGCTGTAAAACAACGAAATCCGGAACCAGTCTTTCAGATTGTGACAGAATTGCTATCAAAGCTTTGTTGGATAAGTTAACAAGTAACGATATTGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCCAAGAGGAATGCAGATAACCGAGTATGTATTGCCGAGGCAGGAGCAATACCGCTTCTCGTGGAATTGTTGTCTTCTGGTGATCCTCGAACTCAAGAGCACGCCGTTACAGCGCTTCTCAATCTTTCCATCAATGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTTGACGTACTGAGAAACGGAAGCATGGAGGCTAGAGAAAACGCAGCCGCGACTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAAGTTGCTATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGTTACTTTGCGAAGGTACTCCAAGAGGCAAAAAAGATGCGGCTACTGCAATATTTAACCTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTAAAAGCCGGGATAGTTGCTGCACTGATACGGTTTATGAAGGATGCAGGGGGTGGAATGGTTGACGAGGCGCTAGCGATAATGGCAATCCTTGCAGGCCATCACGAAGGCAGGATGGCGATCGGTCAGGCTGAACCAATTCCTATTTTAGTTGAGGTTATACGAACCGGATCACCGCGAAACCGGGAGAATGCGGCTGCGGTTTTGTGGTCGGTATGTACAGGAGATATAGTGCAATTAAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAAGGATTATCAGAGAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAACGAATTGAAGGGGAGGATAGTTTACAAAATTCCTAG 1896 0.433 MGGSENSKAMVVNRLSDSVREISGLPECQNVCKRMYGNLIRRVKLLSPLFEELKDCDETLCDQQLEAFEALRVALDLAMILLKSINQGSKLYQALRRNDAADEFQQVTGKIEAALSDISYKKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDMAVALKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVIASNGELADSFETVSSLLRKLKDWVLTENPEVDNAYENEKVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCESNGVELPKKQGSCKTTKSGTSLSDCDRIAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSGDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAALIRFMKDAGGGMVDEALAIMAILAGHHEGRMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSVCTGDIVQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRIEGEDSLQNS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04796 631 SUPERFAMILY ARM repeat 345 619 IPR016024 -
Vivi1g04796 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Vivi1g04796 631 Gene3D - 10 122 IPR036537 GO:0007166
Vivi1g04796 631 SUPERFAMILY RING/U-box 247 323 - -
Vivi1g04796 631 CDD MLKL_NTD 28 141 - -
Vivi1g04796 631 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Vivi1g04796 631 FunFam RING-type E3 ubiquitin transferase 248 321 - -
Vivi1g04796 631 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Vivi1g04796 631 Gene3D - 331 628 IPR011989 -
Vivi1g04796 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Vivi1g04796 631 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Vivi1g04796 631 FunFam RING-type E3 ubiquitin transferase 345 458 - -
Vivi1g04796 631 FunFam RING-type E3 ubiquitin transferase 459 630 - -
Vivi1g04796 631 SMART arm_5 498 538 IPR000225 GO:0005515
Vivi1g04796 631 SMART arm_5 375 415 IPR000225 GO:0005515
Vivi1g04796 631 SMART arm_5 416 456 IPR000225 GO:0005515
Vivi1g04796 631 SMART arm_5 457 497 IPR000225 GO:0005515
Vivi1g04796 631 SMART arm_5 539 579 IPR000225 GO:0005515
Vivi1g04796 631 CDD RING-Ubox_PUB 249 301 IPR045210 -
Vivi1g04796 631 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Vivi1g04796 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Vivi1g04796 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Vivi1g04796 631 Coils Coil 126 146 - -
Vivi1g04796 631 PANTHER U BOX DOMAIN-CONTAINING 35 620 - -
Vivi1g04796 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04796 Vivi-Chr1 103118337 103121342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04796 11 624 U-box Gene Family AT3G54850 66.829 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04796 - - vvo:131594834 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04796 1 103118337 103121342 Vivi1g04796 1 103118337 103121342 ECH