Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04776 ATGGATAGATCTACAAGTGCCAATTATTTAAAGCCTAATAAGAACTGCAATTTAACCTCATGGGTTCCTGGTTGCGAGCCCGGATGGGCATGTAGTGTTCCCCCAAGCGAGAAGATTGACCTTAGAGATTCAAAGGATGTGCCCGCTAGAACTTCAAATTGTCGAGCATGTTGCGAAGGCTTCTTTTGTCCTCACGGTATCACATGCATGATACCTTGCCCTCTAGGTTCCTATTGCCCCCTTGCTACACTCAATAAAACAACTGGCGTATGTGAACCATATCTTTATCAACTACCTCCAATGCAGCCAAACCATAGCTGTGGAGGAGCAAATATTTGGGCTGATTTTAGTAGCAGTAGCGAAACATTTTGTTCAGCAGGATCCTTTTGTCCAACAACCACCACAAAATTTCCTTGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACATCTGAGAAAAGATGTTTCAAGCTAAGTTCATGCAATTCAAATACAGCAACCCAAAACATGCATGCGTATGGAGTTATGCTCATTGCAGCTTTGAGTACATTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTAGCAAAATCAAGAGAAGCAGCAGCTAGAAGTGCAAGGAAAACTGCAAATGCAAACCAAAGATGGAAACTTGCAAAAGATGCTGCTAAGAAAGGTGCATCTGGGCTGCAAGCTCAATTATCACGGAAATTCTCTCGTAAGAAGGACGAAGAAACTCTTGAAAAGGTTAAAATTTTAAACCAAGAGACTTCTGAAACAGATGTTGAATTGTTTCCACATTCACAACCTTCTAGCATGATTGGAAGTTCTTCTTCCGTGCCAACTGAAAAGGGGGAACATCCAAGTGGGCTAATGCATATAGTACATGAAATTGAAAATGACCCGCATGTTAACCACAATCCCGATACAAGAAAAGAAACTAGATATAAAAGCGCTATAAAGGAAAAACAACCACATACTCATACACAAATTTTCAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCTCAGCAACAAGAAAATAAGAACCTTACTTTCTCAGGAGTACTAAAAATGGCTACAAATACTGAGAAAATTAAGAGGCCTTTTATTGAGATTTCTTTCCGAGATCTGACTCTCACACTGAAATCTCGAAACAAACATATATTGAGAAATGTTACTGGGAAAATCAAACCTGGCCGTATCACCGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGTTCAATTCTTATAAATGGAAGGAACGATTCAGTTCACTCGTTTAAGAAAATTATTGGCTTTGTTCCACAAGATGATGTAGTTCATGGAAACTTAACAGTGGAAGAAAATCTCTGGTTCAGTGCACAGTGCAGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCCGTAGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGACAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGTTAGATGAGCCAACATCTGGCCTGGATAGTGCATCATCTCAGCTTCTTCTAAGAGCATTAAGACGTGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTCAAGATGTTTGATGACTTGATACTTTTGGGCAAAGGTGGTCTCATGGTCTATCATGGATCTGCCAAGAGAGTTGAAGAATACTTTTCAGGTCTCGGGATCAATGTTCCGGAGCGGATTAACCCTCCGGATTACTATATTGACATTCTGGAGGGCATAGCGGCACCTGGTGAAAGTTCAGGACTCAGTTACGAGGATCTGCCAGTTAAATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCAGCACAGTTTGATATGCCTCAAAGTGTAAATCCAGCTAATGACATAGACTCCAATGGCTCAGGTGATATTGGAAAGACGTTTGCTGGAGAATTATGGAATGATGTGAGAAATAATGTGGAAGTGCGAGGGGAAAAGATAAAACTTAACTTTTCAAAATCCAAGGATTTATCTGACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGATTGCGAGAAGCTAGGATTCAGGCAGTAGATTATCTTATTTTATTACTTGCTGGAGCCTGCTTAGGATCAATTACCAAATCGAGCGACCAAACATTTGGAGCATCCGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCATTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCGAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTCTATTTATCTATGTTCTATTTCTTAACCAATCCAAGATCTACTTTTGCAGCTAATTATATCGTGTTGCTTTGTCTTGTATACTGTGTCACCGGCATAGCATACGCATTGTCCATATTTTTTGAACCTGGTGCAGCTCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAATTTTAAAGGCTATAGCTAATTTATGTTACTCTAAGTGGGCTTTACAAGCATTGGTCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGTTGCGGATCGCTTTTAAAAAGTGGGTATAATCTTCATGATTGGAGTCTCTGCTTATCCATGCTCATTCTTATGGGTGTAATCGGTCGTGCAATAGGGTTTTTCTGTATGGTTACCTTCAAAAAGAAGTAA 2970 0.4081 MDRSTSANYLKPNKNCNLTSWVPGCEPGWACSVPPSEKIDLRDSKDVPARTSNCRACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMQPNHSCGGANIWADFSSSSETFCSAGSFCPTTTTKFPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGVMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANANQRWKLAKDAAKKGASGLQAQLSRKFSRKKDEETLEKVKILNQETSETDVELFPHSQPSSMIGSSSSVPTEKGEHPSGLMHIVHEIENDPHVNHNPDTRKETRYKSAIKEKQPHTHTQIFKYAYAQLEKEKAQQQENKNLTFSGVLKMATNTEKIKRPFIEISFRDLTLTLKSRNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVTGSILINGRNDSVHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLMVYHGSAKRVEEYFSGLGINVPERINPPDYYIDILEGIAAPGESSGLSYEDLPVKWMLHNGYPIPLDMRQHAAQFDMPQSVNPANDIDSNGSGDIGKTFAGELWNDVRNNVEVRGEKIKLNFSKSKDLSDRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFAANYIVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYSKWALQALVIANAERYQGVWLITRCGSLLKSGYNLHDWSLCLSMLILMGVIGRAIGFFCMVTFKKK 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04776 989 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524|GO:0016887
Vivi1g04776 989 SMART AAA_5 408 600 IPR003593 GO:0016887
Vivi1g04776 989 CDD ABCG_EPDR 380 606 - -
Vivi1g04776 989 MobiDBLite consensus disorder prediction 271 295 - -
Vivi1g04776 989 FunFam ABC transporter G family member 24 376 618 - -
Vivi1g04776 989 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 336 976 - -
Vivi1g04776 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 604 IPR027417 -
Vivi1g04776 989 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 623 IPR003439 GO:0005524
Vivi1g04776 989 Gene3D - 380 617 IPR027417 -
Vivi1g04776 989 MobiDBLite consensus disorder prediction 271 292 - -
Vivi1g04776 989 Pfam ABC transporter 399 551 IPR003439 GO:0005524
Vivi1g04776 989 Pfam ABC-2 type transporter 580 989 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04776 Vivi-Chr1 102478941 102483996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04776 382 601 Calmodulin-binding Proteins AT2G36910 26.141 4.63e-12 68.6