Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04771 ATGGGCAATGTTGAAATCCCTAATTGGCTTGAGGAGTTGCCACTGGCACCTGAATTTCGACCTACAGATACTGAATTTTCTGACCCTATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAACTTTGGGATTTGCAAGATTATCCCACCCTTGCCCAAACCTTCAAAAAAATATGTTTTTTCGAATTTGAACAAGTCCCTTTTGAAGCGTCCCGAATTGGGTCCAGATAACAGTTCTTTAGGAGTTGGTAATTCTTTGAAATCAGGTTCTTGGGATAGTAGTACTGATGGGATATCGCGGGCTGTGTTTACTACAAGGCAACAAGAAGTGGGGCAGAATGTGAAAAAAATCAAAGGGACGGATCAGAAGCCACTGTCATGTGTTCATAAGCAAGTATGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCAAGAAGCGTTCTTGGTATGGCGAAGGATGTTTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCGGCTTCAGAGAAGCCAATATATGTGGAGTATGCCAATGACGTGCCTGGGTCTGCTTTTGGAGAATCACAGGGTCAGTTTTATCGAAGTCATAGAAGGCAACGGAAAAGGACTTATTATAAGAGTAGAGTAGATAGCTCTGTTTGTAAACAAACTGAAATGGATGGTGTAAAAGACACAAAAAACGACCAACCTACCGGCGTTGCGACTCCAAGTCATGCTGACTCATGTTTAGAGATGTCTAAATCAGCTATGACTATGTCACCATCTACAGAAAATGAGGCATCACAGTCTTCTAAGGAGAGGACTTCAGATGCCAACAATGATATGCAAGGCACTTCAGGTTGGAAGCTTTCAAATAGTCCTTGGAATTTGCAAGTTATTGCCCGTGCTTCAGGCTCACTAACGCGTTTCATGCCGGATGATATTCCTGGTGTTACTTCTCCTATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGAGGACCATGAGCTTCACAGCTTGAATTATCTTCACACTGGCTCATCAAAGACTTGGTATTCTGTTCCTGGAAGTTATGCTCTTGCCTTTGAGGAAGTCATCCGCACCGAGGGTTATGGTGGTGATATTGATCAATTTGCTGCTTTGAAACTATTGGGCGAGAAAACAACTCTCTTAACACCTGAGGTAGTTGTTGGATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTCGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGGACTCCACAATGGCTTGGTATAGCTAAAGAAGCTGCTGTGCGTAGAGCTGCAATGAATCATCTTCCCATGCTCTCCCATCAGCAACTGCTTTACTTGCTTACCATATCTTTTATTTCAAGTGTGCCAAGGACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGACAGAGAGATTCTAGTAAAGCAGGCTTTTATAGAAGATATGCTGCAGGAAAACAAACTGCTATCCGTTCTTCTTGGAAAAGAAGCTACTAAACAAGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGTCAGCTGCCGGATTTAGCTTCTACTTCTGGAACCTATGTAACAGACATGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCATTCTCTTCTTGATGATATGAGTTTGTACATGGAGAATCTGACCGATTTATATGATGGTTGTGATGATAGTCTTCCATGTCACTTCCAAACTGACTCAGGAGCATTGGCTTGTGTGGGATGTGGAATACTTGGTTTTCCATTTATGACATTGATACAGCCAACTGAAAAATCAATAATGGAACTTCTTCCTGATAATCATCATCTAGTTGAAGATTCTTCCCTGAACTCTGTTGCCTCCCTTCACAGTGTAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGCTTTGGCAGAGGATTCACAAAATCAGTCACTGATCAAGTGCAATAAGTGTTGGAACACCTCCAGTAAATTTATGAAGCCGCGGATTTTCTGCTTGGAGCATGCTGTTCAGATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAACTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGTGCAGTTGCAGAAGAGATAAAAAGTGATTTTGATTATAATGAGGTTCCAATAGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAACTTGATGAATGTGAAGACTGGACATCTAAACTAGGCCTTAACCTGCGGTTTTGTGTCAACAGTATGAACAAATCTCCATGTAAACAAGTTCCTTTGACACTAGCATTAGGGATGCAGCTTTATCCTAAACATCCTGGTTTATCTATAAATTGGCATTCACAAAAAACTCGGTCTAAAAGGTCGAATTGTTTAGCTCAGTTTAAACCTGACAAAATTCAGATAAAGAAAGACGATCCTTTGCAAATAGATGGCTCCATTGCTGAAAAGAAGCTAATTCAATATTCAAGAAAGAAGTTCAAGTCAAAGCAAAGCAGTTTCTCTGCAGCAAGCACGGTTCGTGAATCCCATGAAAAGTCCAAAAATGCACCAGCTGTTTTGAGTGGGGATCATTATAAATGTGTTTCTAAAGTTGAGCTTGACACAAACAGTTTCAGGAGTGATTGTGCTTTGTCGCATGGCTCTGCTTCTGCTGCAATATCTCCAATGCATCATGAAATCCAGAATGCCGAAGCTCCCACTAGTATGAGCTTGAATACCGGTGTCTCAGAAATATGTGGCAAAGAGAGTGAGGATTGTCAGGACAAGAAATATTCTCATTCTCTTACAAGTGGAATAGATGGAAATATTGATGTGTTAGGAAACAACCAAATTACTGAAGCATTTGTCAATGATAGCAAGTGTAATGACATAGATTTGGATGGTGAAGGGTATCTAGAATATCAGTCTGCATGCAAAAGCAACAGTGAAGCTGTTTTATCGACATCAATTAAAAACCAACCTGCTCTTGCCACTGTTGATGGAAGTTTTGAAAGTCCAAATTATACTTATGCTGAAGAAAGAGTAAACAATTCAATGTCATTAAAAGTGACAACTGAGGGAGAAAGTAAGTCTTTGAATGAAATGAACAAGGAACCTCTAAATGATGATAAAACAATAAGCGAACATAGTCCTATTGCAGACGTTTGTGAAGTTCCAAGAGAGGTTTATGCTTCTGCAGACTTCTATGATACAGTAAGGTTGGATGGTGAAATGCAGCATGAAGGACAGGTTGGAAAAAGTGGTAAAGAAGAAATAATTCAGTCCACTCATATTTCAGCAAAACAAATTTGCGAATCTACAAGTGGGGAATATGTTGAGGGGTTGCAAGATGAAGCGGTTTTAGAGTCTGCAAAGCAGTCTCCGATCCAAATTAAGAGTAGAACTAATGAGGAACCCGTTTCTAGTTTTGTTGCAAAAGGCAATAGTAGAAGTGTATCTGTATCAGAAATAGGATGTTCTGAAGTTTCAGTAGAAACCTATCCCGAAGAAGACTCATGTATTCAATTTCTTCCGAGTACAGAAACAGAAATGGAAATCCAGCCCGTTAATAGAATTAATGAGGAACTTTCTGTATCAACTCAGGAATGTTCTCAGACCGAGAAAAAGACTTGTGGTAAAGAAAACATAAATGGAAGCGAAGTAGATTTGTCACAAGATAATGGGGAGCTGGAAAGCTGTGACTTGACTACAGCAGCTCCCAGATCCAATCCCGCAAAGAACAAAAAGAGGAAAATGGAAGACCCTGCTAAGAACCAACTTGATTGCTATGACTTTATAAGAAGTCCATGTGAGAGGTTGAGGCCAAGAACTGGGAAGATTGCCACCACAAGCAATAGTGGAAGAGTCATCAGCCAAAACGACGAGGAAAATCCGGTTGCTAAAAGGACACGGAAACCTCCCGAAGCATCTTCAGTTCCTCGCAAAGATAGAGAAGCTTCAGTTCCTCGCAAGGATAAAAAAGTCAATGTTAAAAGGCCGCACAAGTGCGACCTTGATAATTGCCGTATGCGTTTCACAACCAAGGCTGAGTTACAGATGCACAAACGTAACCTTTGCCCACATGAAGGGTGTGGTAAGAAATTCAGTTCCCACAAATACGCACTTATTCACCAGCGCATTCACGAGGACGATAGGCCCCTGAAATGTCCATGGAAAGGCTGTTCCATGTCATTCAAGTGGGCATGGGCAAGAACCGAGCATCTAAGGGTTCATACTGGGGAGAAACCTTATCAATGTAAAGTCGAGGGTTGCGGCCTTTCTTTCAGGTTTATATCAGATTTTAGCAGGCACAGACGAAAAACAGGACACTATGTGAAATCTCCCGCCTGA 4476 0.4102 MGNVEIPNWLEELPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGPDNSSLGVGNSLKSGSWDSSTDGISRAVFTTRQQEVGQNVKKIKGTDQKPLSCVHKQVWQSGEVYTLEQFESKSKSFARSVLGMAKDVSPLVIEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYRSHRRQRKRTYYKSRVDSSVCKQTEMDGVKDTKNDQPTGVATPSHADSCLEMSKSAMTMSPSTENEASQSSKERTSDANNDMQGTSGWKLSNSPWNLQVIARASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNYLHTGSSKTWYSVPGSYALAFEEVIRTEGYGGDIDQFAALKLLGEKTTLLTPEVVVGSGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGIAKEAAVRRAAMNHLPMLSHQQLLYLLTISFISSVPRTLLPGVRSSRLRDRQKEDREILVKQAFIEDMLQENKLLSVLLGKEATKQVVLWNADLLPDSGKYRQLPDLASTSGTYVTDMSNDNISSADKSSHSLLDDMSLYMENLTDLYDGCDDSLPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVEDSSLNSVASLHSVVSRDLSVSELALAEDSQNQSLIKCNKCWNTSSKFMKPRIFCLEHAVQIVEMLQSKGGANVLITCHSDYPKIKAHASAVAEEIKSDFDYNEVPIDIASPENLALIDLAIDGEELDECEDWTSKLGLNLRFCVNSMNKSPCKQVPLTLALGMQLYPKHPGLSINWHSQKTRSKRSNCLAQFKPDKIQIKKDDPLQIDGSIAEKKLIQYSRKKFKSKQSSFSAASTVRESHEKSKNAPAVLSGDHYKCVSKVELDTNSFRSDCALSHGSASAAISPMHHEIQNAEAPTSMSLNTGVSEICGKESEDCQDKKYSHSLTSGIDGNIDVLGNNQITEAFVNDSKCNDIDLDGEGYLEYQSACKSNSEAVLSTSIKNQPALATVDGSFESPNYTYAEERVNNSMSLKVTTEGESKSLNEMNKEPLNDDKTISEHSPIADVCEVPREVYASADFYDTVRLDGEMQHEGQVGKSGKEEIIQSTHISAKQICESTSGEYVEGLQDEAVLESAKQSPIQIKSRTNEEPVSSFVAKGNSRSVSVSEIGCSEVSVETYPEEDSCIQFLPSTETEMEIQPVNRINEELSVSTQECSQTEKKTCGKENINGSEVDLSQDNGELESCDLTTAAPRSNPAKNKKRKMEDPAKNQLDCYDFIRSPCERLRPRTGKIATTSNSGRVISQNDEENPVAKRTRKPPEASSVPRKDREASVPRKDKKVNVKRPHKCDLDNCRMRFTTKAELQMHKRNLCPHEGCGKKFSSHKYALIHQRIHEDDRPLKCPWKGCSMSFKWAWARTEHLRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYVKSPA 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04771 1491 ProSiteProfiles Zinc finger C2H2 type domain profile. 1459 1490 IPR013087 -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 1337 1371 - -
Vivi1g04771 1491 ProSitePatterns Zinc finger C2H2 type domain signature. 1431 1453 IPR013087 -
Vivi1g04771 1491 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 1073 1088 - -
Vivi1g04771 1491 Gene3D Classic Zinc Finger 1422 1453 - -
Vivi1g04771 1491 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Vivi1g04771 1491 SUPERFAMILY beta-beta-alpha zinc fingers 1439 1482 IPR036236 -
Vivi1g04771 1491 ProSitePatterns Zinc finger C2H2 type domain signature. 1401 1423 IPR013087 -
Vivi1g04771 1491 SUPERFAMILY Clavaminate synthase-like 292 462 - -
Vivi1g04771 1491 SUPERFAMILY beta-beta-alpha zinc fingers 1400 1436 IPR036236 -
Vivi1g04771 1491 SMART c2h2final6 1459 1485 IPR013087 -
Vivi1g04771 1491 SMART c2h2final6 1399 1423 IPR013087 -
Vivi1g04771 1491 SMART c2h2final6 1376 1398 IPR013087 -
Vivi1g04771 1491 SMART c2h2final6 1429 1453 IPR013087 -
Vivi1g04771 1491 Gene3D Classic Zinc Finger 1400 1421 - -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 1068 1088 - -
Vivi1g04771 1491 ProSiteProfiles Zinc finger C2H2 type domain profile. 1399 1428 IPR013087 -
Vivi1g04771 1491 FunFam Probable lysine-specific demethylase ELF6 1426 1455 - -
Vivi1g04771 1491 ProSitePatterns Zinc finger C2H2 type domain signature. 1461 1485 IPR013087 -
Vivi1g04771 1491 Coils Coil 1231 1251 - -
Vivi1g04771 1491 Gene3D Classic Zinc Finger 1454 1485 - -
Vivi1g04771 1491 SMART JmjN_1 15 55 IPR003349 -
Vivi1g04771 1491 Pfam JmjC domain, hydroxylase 325 443 IPR003347 -
Vivi1g04771 1491 Pfam jmjN domain 17 50 IPR003349 -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 1320 1335 - -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 1318 1371 - -
Vivi1g04771 1491 SMART cupin_9 291 460 IPR003347 -
Vivi1g04771 1491 Gene3D Cupin 9 464 - -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 1274 1296 - -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 225 289 - -
Vivi1g04771 1491 ProSiteProfiles Zinc finger C2H2 type domain profile. 1429 1458 IPR013087 -
Vivi1g04771 1491 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1425 - -
Vivi1g04771 1491 MobiDBLite consensus disorder prediction 237 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04771 Vivi-Chr1 102426044 102435543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04771 1 874 C2H2 Transcription Factor Family AT5G04240 54.576 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04771 JmjC 3.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04771 - - gmx:100819845 2031.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04771 1 102426044 102435543 Vivi1g04771 1 102426044 102435543 ECH