Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04770 ATGGAGTTTTCAAATGGAGATCATATCAATAACAATGGTGGTAACAGCAATGGTTCTTCACTGAATCTTTGCAATGGCGGAACCAACCGTGACCCTTTGAATTGGGGTATGGCGGCAGATTCAATGAGAGGAAGTCATTTTGATGAGGTGAAGCGTATGGTTGAGGAGTACCGGAAGCCGGTTGTGCCGTTAGGCGGAAAGGGGTTAAAGATATCTCAAGTGGCTGCCGTTGCTACCCATAACACCGGTGTGGCGGTTGAACTTGCCGAAGAGACGCGCGCTGCCGTTAAGGCCAGTAGTGATTGGGTTTGTGAGAGTATGAATAAAGGGACTGATAGCTATGGAGTGACTACTGGGTTTGGTGCAACCTCTCACAGGAGAACAAAACAAGGTGGTGCTCTTCAAAATGAACTCATAAGATTTCTGAATGCTGGAATTTTTGGCAATGGAACAGAAACAATTCAAACATTACCTCATACAGCTACAAGAGCAGCCATGTTGGTTAGAATCAACACACTGCTTCAAGGATATTCAGGAATAAGATTTGAAATCATGGAGGCAATAGCAAAATTTCTGAACCATAACATCACACCATGTCTTCCATTAAGAGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTATCATATGTCGCCGGCCTTTTAATCGGAAGGCCGAACTCGAAATCTGTTGGACCTGATGGAAAAATTCTCAATGCTAAAGAGGCTTTTCAACTAGCTGGAATTGAAACTGGTTTTTTCGAGTTGCAGCCTAAAGAAGGTTTGGCATTGGTGAATGGTACTGCTGTTGGATCAGGTTTGGCTTCGTTGGTTCTTTTTGAGACAAATTTACTTGTTGTTTTGTCGGAACTTTTGTCGGCGATTTTCGCCGAGGTTATGCAAGGAAAGCCGGAATTCAGTGACCATTTGACTCATAAGCTGAAACACCATCCTGGTCAAATTGAGGCTGCTGCTATAATGGAACATATTTTAGATGGAAGTTATTATGTTAAGGCTGCACAAAAAGTCCATGAAATTGATCCACTTCAGAAGCCTAAACAAGATAGGTACGCGCTTCGGACGTCGCCGCAGTGGCTTGGACCGCAGATTGAAGTGATTCGGCACGCAACGAAGATGATTGAGAGGGAGATCAATTCTGTGAATGACAATCCTCTTATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGGAATTTCCAAGGTACACCGATCGGTGTTTCCATGGATAACACGCGTTTAGCCATTGCTTCTATCGGGAAACTCATGTTTGCGCAATTCTCTGAGCTTGTGAATGACTTGTATAACAACGGATTGCCTTCGAACCTAACCGCGAGCCGTGATCCGAGTTTGGATTACGGCTTCAAAGGATCAGAAATTGCAATGGCATCCTATTGCTCAGAACTTCAATACCTTGCTAATCCTGTCACTACTCATGTTCAAAGTGCTGAGCAGCATAACCAAGATGTTAACTCCTTAGGCTTGATTTCATCACGAAAAACCGCAGAAGCGGTTGAAATATTGAAACTCATGTCATCGACTTACTTAGTCGCATTGTGCCAAGCAATTGATCTGAGGCACATTGAGGAAAACTTGAAAACTGTAGTCAAGAACACAGTGAGTCAAGTGGCTAAGAGAATCCTCACAGTCGGTGTAAATGGCGAGTTGCATCCATCAAGGTTCTGCGAGAAGGATTTGCTAAATGTCGTTGAACGCGAGTACGTGTTCGCTTACATTGACGACCCTTGCAGCGCGACATACCCTCTAACGCAGAAGCTGAGACATGTACTAGTTGATCATGCACTGCAAAACGGCGATAAGGAGGCAAACTCAGCAACCTCGATTTTCCAAAAGATAGGAGCTTTTGAGGAAGAGCTTAAGACCCTTTTACCTAAAGAGGTTGAAAATGCAAGAGCTGAAGTTGAAAATGGAAACCCTGCAATTCCTAACAGGATCAAGGAATGTAGGTCTTATCCATTGTACAAGTTTCTGAGAGAAGATTTGGGGACATGTTTGCTGACAGGTGAGAAAATTAAGTCACCTGGTGAAGAATGTGACAAGGTTTTCTCAGCATTGTGTGATGGAAGTTTTATTGATCCTATGTTGGATTGTCTTAAGGAATGGAATGGTGCTCCTCTACCTATATGCTAG 2169 0.4352 MEFSNGDHINNNGGNSNGSSLNLCNGGTNRDPLNWGMAADSMRGSHFDEVKRMVEEYRKPVVPLGGKGLKISQVAAVATHNTGVAVELAEETRAAVKASSDWVCESMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTETIQTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSVGPDGKILNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLVLFETNLLVVLSELLSAIFAEVMQGKPEFSDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDLYNNGLPSNLTASRDPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTYLVALCQAIDLRHIEENLKTVVKNTVSQVAKRILTVGVNGELHPSRFCEKDLLNVVEREYVFAYIDDPCSATYPLTQKLRHVLVDHALQNGDKEANSATSIFQKIGAFEEELKTLLPKEVENARAEVENGNPAIPNRIKECRSYPLYKFLREDLGTCLLTGEKIKSPGEECDKVFSALCDGSFIDPMLDCLKEWNGAPLPIC 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04770 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 204 220 IPR022313 GO:0016841
Vivi1g04770 722 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g04770 722 CDD PAL-HAL 67 532 IPR001106 -
Vivi1g04770 722 Gene3D Fumarase/aspartase (Central domain) 269 717 - -
Vivi1g04770 722 Gene3D - 535 656 IPR023144 -
Vivi1g04770 722 PANTHER HISTIDINE AMMONIA-LYASE 26 722 IPR001106 -
Vivi1g04770 722 FunFam Phenylalanine ammonia-lyase 535 656 - -
Vivi1g04770 722 FunFam Phenylalanine ammonia-lyase 269 561 - -
Vivi1g04770 722 Gene3D - 24 268 IPR024083 -
Vivi1g04770 722 Pfam Aromatic amino acid lyase 69 543 IPR001106 -
Vivi1g04770 722 FunFam Phenylalanine ammonia-lyase 23 268 - -
Vivi1g04770 722 SUPERFAMILY L-aspartase-like 31 722 IPR008948 GO:0003824
Vivi1g04770 722 NCBIfam phenylalanine ammonia-lyase 31 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04770 Vivi-Chr1 102389273 102395238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04770 23 722 Monolignol Biosynthesis Gene Families AT3G53260 80.282 0.0 1208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04770 K10775 - gmx:100801470 1254.2