Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04736 ATGGAGAATAATGGCCGAGTATGCACCATTTGTAATAGGTTCTTTTCTAATGGAAAGGCTTTGGGAGGCCACATAAAGTCCCACTATTCCAGATTGCCCATCCCTCCAAAACCTCCATTAAATAGTCAAGTACCTGAATATTCAAAAGAGTCAACCCAACGTCCAAATCACTTTACCACAACATCTTCCTTATCACATGTCAATACAAGAAATAACTCTATACACAATATTAGATATTTGAAAAGAAACTTCAATTATAACCTAGAAAACTTTGGTGGGAAAACTAGGTTTGAGTTTTATCCTAAAAATCCAACTGGAAAAAGATCGAAACGCAACCGTAGACAATTCAAAGTGTCTGAAGAAAGAGAAAAGAATATCCAATTTAATATGGCTGGAGAAAGAGAAGAGAATGCACAATTTAATGTGGCTGAAGAAAATGAAGATAGTACACAATTTCAATTAGTGTATGATGTTTTTGATATAGAAGCTGCTACAACACTGATTGGTATTTGTGCGAAAGAATGGCAACAAATCAAGGAAAAATACTATCAAAAGAAGGAAAAAAATTTGTGA 573 0.3421 MENNGRVCTICNRFFSNGKALGGHIKSHYSRLPIPPKPPLNSQVPEYSKESTQRPNHFTTTSSLSHVNTRNNSIHNIRYLKRNFNYNLENFGGKTRFEFYPKNPTGKRSKRNRRQFKVSEEREKNIQFNMAGEREENAQFNVAEENEDSTQFQLVYDVFDIEAATTLIGICAKEWQQIKEKYYQKKEKNL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04736 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vivi1g04736 190 Pfam C2H2-type zinc finger 7 30 - -
Vivi1g04736 190 MobiDBLite consensus disorder prediction 32 64 - -
Vivi1g04736 190 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 134 IPR044303 GO:0006355
Vivi1g04736 190 MobiDBLite consensus disorder prediction 44 64 - -
Vivi1g04736 190 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04736 Vivi-Chr1 101361227 101361799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04736 8 166 C2H2 Transcription Factor Family AT1G02030 23.270 2.90e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04736 zf-C2H2_6 9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04736 - - psat:127095871 286.574