Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04734 ATGGAGAATAATGGTCGAGTATGCACCATTTGTAATAGGTTCTTTTCTAATGGGAAGGCTTTGGGAGGCCACATAAAATCCCACTATTCCAAATTACCAATCCCTCCAAAACCTCCATTAAGTAGGCAAGTACCTGAATATTCAGTAGAGTCAACCCAACCTCCAAATCACTTTATCACCACATCTTCCTTATCAACTACAAATACAAGAAATAACTCCATACACAATCTTAGATCTTTGAAAAGAAACTGCTATTATAACCTAGAAAACTTTGGTAGGAAAATTGTGTTCGAGTTTTATCCAAAAAAACCAACTGGAAAAAGATCGAAACGCAGTCGTAGACAATTCAATGTGATTGAAGAAAAAGAAAAGAATACCCAAATTAGCGTGGCTGGAGAAAAAGAAGAGAATGCACAATTTAATGTCGCTGAAGAAAATGAAGAGAGCATACAATTTCAATTAGTGTATGATGATCATGATATGGAAGCTGCTAAAACACTGGTTATTATTTCTGCGAAAGAATGGCAACATATCGAGGAGAAATACTATCAAAAGAAGGCAAAAGTTTGTGAAAGTGATCCCGTTGGATTTAAGTGTGATATTTGTCATGAAGTGTTTCAATCTCATCAAGATTTTGTTGGACATGATAAAATGCATAAGGAAAGTAATAATCTATATGAAGAAGTCAGCGTAAGTGGAAACGAAGATGATATTGTATATGCAGAAGTGCATAAGTGTATGTATTGCTTCGAAATCTTTGAATGTGATGAATTACTTGAGAAACACAGGAAGGTACACTTATTTTATTCTTCTTATTCTAAGCCATAG 828 0.3454 MENNGRVCTICNRFFSNGKALGGHIKSHYSKLPIPPKPPLSRQVPEYSVESTQPPNHFITTSSLSTTNTRNNSIHNLRSLKRNCYYNLENFGRKIVFEFYPKKPTGKRSKRSRRQFNVIEEKEKNTQISVAGEKEENAQFNVAEENEESIQFQLVYDDHDMEAAKTLVIISAKEWQHIEEKYYQKKAKVCESDPVGFKCDICHEVFQSHQDFVGHDKMHKESNNLYEEVSVSGNEDDIVYAEVHKCMYCFEIFECDELLEKHRKVHLFYSSYSKP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04734 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vivi1g04734 275 SMART c2h2final6 244 266 IPR013087 -
Vivi1g04734 275 SMART c2h2final6 6 28 IPR013087 -
Vivi1g04734 275 SMART c2h2final6 197 219 IPR013087 -
Vivi1g04734 275 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 268 IPR044303 GO:0006355
Vivi1g04734 275 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Vivi1g04734 275 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vivi1g04734 275 MobiDBLite consensus disorder prediction 33 56 - -
Vivi1g04734 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Vivi1g04734 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 266 IPR013087 -
Vivi1g04734 275 SUPERFAMILY beta-beta-alpha zinc fingers 7 219 IPR036236 -
Vivi1g04734 275 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Vivi1g04734 275 Pfam C2H2-type zinc finger 197 221 - -
Vivi1g04734 275 Pfam C2H2-type zinc finger 7 30 - -
Vivi1g04734 275 Gene3D Classic Zinc Finger 195 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04734 Vivi-Chr1 101315398 101316225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04734 8 266 C2H2 Transcription Factor Family AT3G60580 25.448 1.85e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04734 zf-C2H2_6 0.0009 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04734 - - vvo:131622706 534.643