Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04688 ATGTCTGGCAATTCAGGTTGCACCGTTTACATAGGCAATCTGGATGAGAGGGTTACAGAAAGGGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTGGACTTGCACATTCCTAAAGATAAGGAAACTGAGAAACCTAAAGGCTTTGCCTTTGCAGAGTTTGAAACTGAGGAGATTGCAGAATATGCTGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGGACACTGAGGTTTGCGGCTGCAAATAAGGACAAAAACACCCCTAATAGTTCTCCAGCTACTACACCCACTTCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTTCAAGTAACTAGTTCAGAAAATTTTCAGCATTCCCCTAGGCAATCAATACCTAGCCGATTCTCAGATCATGCGGTGAATTATTCTCAAGTTCCACCTCCTCATCGTGTAACTGATCAATCTAGTGGGTATGGATCTCACTACAGTGGCAACCAGTATGATTACAGCCGGAGAGCTTTTGGGGAGGCATTGGATAGCGCTAACGGTTCTGGCGGTTCTAGGTCACGCCGCCCTGATGGAATTAGCCCAGTCTCTTATCCACCTTACTAA 603 0.4478 MSGNSGCTVYIGNLDERVTERVLYDILIQAGRVVDLHIPKDKETEKPKGFAFAEFETEEIAEYAVKLFSGLVTLYKRTLRFAAANKDKNTPNSSPATTPTSNSSQRPRPYPVQVTSSENFQHSPRQSIPSRFSDHAVNYSQVPPPHRVTDQSSGYGSHYSGNQYDYSRRAFGEALDSANGSGGSRSRRPDGISPVSYPPY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04688 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Vivi1g04688 200 MobiDBLite consensus disorder prediction 144 164 - -
Vivi1g04688 200 MobiDBLite consensus disorder prediction 86 200 - -
Vivi1g04688 200 Gene3D - 2 96 IPR012677 -
Vivi1g04688 200 CDD RRM1_SF3B4 9 81 IPR034158 -
Vivi1g04688 200 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 197 - -
Vivi1g04688 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Vivi1g04688 200 SMART rrm1_1 8 82 IPR000504 GO:0003723
Vivi1g04688 200 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
Vivi1g04688 200 MobiDBLite consensus disorder prediction 86 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04688 9 91 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 2.88e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04688 K12831 - gmx:100784532 283.878