Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04682 ATGGAAGATTCAGAAGAAGATGAGCTTCTAAATCTCAGCCTCTCCGTTAACAGAGAAAGAAAAAAGAAAGGAAAAATCATCACAAGAGAAACCAATAACAACCACAACCACCACCACCACAACAACAACAACTTCTCTATGATTTGTACCAATAGAAACTCCTACGAAGGCTATGAAGGAAAAATCTTCAGACTTCTTCAAATGAGAGAACAAATGCTCCGAAAAACCACTCTCAACCTCGAAGATTCAAACGGCCTTCCCTTAATTCACCTCCTTCTCACAACAGCAACTTCCGTCGACGAAAACAACTTCGATTCGTCTCTCGAAAACCTAACAGATCTTTACCAAACCGTCTCACTCACCGGCGATTCAGTCCAACGAGTCGTCGCTTATTTCACCGACGGCTTAACCGCGAAACTCCTCACCAAAAAATCACCATTCTACGAAATGTTAATGGAAGAACCAACCACCGACGAAGAGTTTCTCGCATTCACAGATCTCTACCGAGTTTCACCGTATTACCAATTCGCTCATTTCACAGCAAACCAAGCTATCTTAGAAACCTTCGAGAAAGAAGAAGAGAGAAACAACCGCTCAATTCACGTGATCGATTTCGATGTCTCATATGGTTTTCAATGGCCTTCACTGATTCAATCACTCTCAGAGAAAGCCACAAGCGCAAACAGAATCTCCCTCAGAATAACTGGTTTCGGTAAGAATTTAAAAGAGCTTCAAGAAACTGAATCTAGGTTAATTAATTTCTCAAAAAGCTTCGTAAACATTGTTTTTGAGTTTCAAGGTTTGTTAAGAGGATCGAGAATAATTAACCTAAGGAAGAAGAAAAACGAAACTGTGGCGGTTAATTTAGTTTCATATCTCAACAAATTAACTTGTTTATTGAAAATTTCTGACACATTGGGATTTGTTCATTCTCTTAACCCTTCCATTGTGGTGATCGTTGAACAAGAAGGTTCTAAGAATCCTTCTAGAACCTTCTTATCAAGATTCACAGACACATTGCATTATTTCGCAGCGATGTTTGATTCACTTGATGATTGTTTACCATTAGAGAGTATCGAGAGGTTGAGAATAGAGAAGAAATTTTTCGGTAAAGAGATCAAAACCATGCTGAATAATTATGATGTAGTTGATGACGGTGGTGTTGATTGTGCAAAGTATGAGAAAATGGAAACATGGAAAGTGAGAATGGAGAATCATGGATTTGTTGGGATGAAAATGAGTTCTAAGTGTTTGATACAAGCAAAGTTGTTGCTGAAGATGAGGACACATTATTGTCCACTTCAGTTTGAGGAAGAAGGTGGTGGTGGTTTCAGGGTTTCTGAAAGAGATGATGGAAAAGCTATTTCATTAGGATGGCAAAATAGGTTTTTGCTTACTGTGTCAGCATGGCAATCACTTTGA 1422 0.3875 MEDSEEDELLNLSLSVNRERKKKGKIITRETNNNHNHHHHNNNNFSMICTNRNSYEGYEGKIFRLLQMREQMLRKTTLNLEDSNGLPLIHLLLTTATSVDENNFDSSLENLTDLYQTVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTTDEEFLAFTDLYRVSPYYQFAHFTANQAILETFEKEEERNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSANRISLRITGFGKNLKELQETESRLINFSKSFVNIVFEFQGLLRGSRIINLRKKKNETVAVNLVSYLNKLTCLLKISDTLGFVHSLNPSIVVIVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKFFGKEIKTMLNNYDVVDDGGVDCAKYEKMETWKVRMENHGFVGMKMSSKCLIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDDGKAISLGWQNRFLLTVSAWQSL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04682 473 ProSiteProfiles GRAS family profile. 79 471 IPR005202 -
Vivi1g04682 473 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 466 IPR005202 -
Vivi1g04682 473 Pfam GRAS domain family 88 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04682 Vivi-Chr1 100103906 100105590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04682 96 470 GRAS Transcription Factor Family AT3G54220 33.247 2.40e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi1g04682 GRAS 3e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04682 - - gmx:100809458 737.258