Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04679 ATGAATCCGACCGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCTTCTTCCTTGGTCTCTCCTGGTAATGGATTACAGACAAATCTGTCATCGGATCTTTCCTCTTTCTACGGGATCGGTATTGAAATGCCTTTCAAAGAAATCAACCAGCCCTCTCGAAGTCAGTCTGTGATTCCAGGTGAATCTGACAAAGATATTAAGATCACTGATCAGGAAAGCAGTAAGCTTCCAGATTGGGATCCTAGTGCGATGTTGAATAATCTTTCGTTCCTGGAAGAGAAGATTCATCAGCTCCAGGAGGTAGTGCATTTGATTGCGAATAAGAAGTGCCAACCTTTTGAACAGCCTCGTGAACTCGTGACTCAAGAACAGCAACTCGTTACAGCTGATTTAACATCGATTATTGTTCAGTTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGAACACTCTGACAGACACAAGTCCGTTGGTTGGACAGCTTAGTCAGCTTCGCGGAATTAACCTTCCTTTTGAAACAGGCACGAGTAATGGTGTTCAGCCACAGAATAATATTGGAAATAAATTGTTTGATCAGTCCATTCATAAAGATGTACCGAATAATTGTGAAATGGAGCAAAACCATAATATGGAAGAACATGAACATAAAGATGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCATATGAGATTTTACAACTAGAGAAAGAAGAAATCCTTGCACCCCACACACATTTCTGTACTATATGTGGCAAGGGGTTCAAGAGGGATGCGAACCTCCGTATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCGGCAGCCCTTGCAAAACCACATAAAGAAACTGGGTCCGAACCAAAGCTTATCAAGAGGTATTCGTGCCCCTACGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAAACTATTTTATGTGTGAAAAACCACTACAAAAGAACACACTGCGACAAGAGTTACACTTGCAGCAGATGCCACACCAAGAAGTTTTCAGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGCTCATGTGGTACAACATTTTCAAGGAAAGACAAGCTCTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGAAGATAATAAAGGACTTGCCGAGCCACCTGATCGATGTGTTCCCAAAGAAAATACAGCTATGGTAGGGAGCATGAACTTCAGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTCGATAACATCATGGACGTGAAAGGTAATATTGATGATCCTATCAATTACTTCTCATCTTTGAACTTTGAAGGCTGTAACTTCGGTGTGTTTAATGAATTCTCTCAACCTCCATTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGCCGAGTTCGTTTAATTATGCTCCTAAATCTGGCGGTGAATCATGTTCTGACAATCTGTAA 1509 0.4201 MNPTGSLCANNWARSSSLVSPGNGLQTNLSSDLSSFYGIGIEMPFKEINQPSRSQSVIPGESDKDIKITDQESSKLPDWDPSAMLNNLSFLEEKIHQLQEVVHLIANKKCQPFEQPRELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRNTLTDTSPLVGQLSQLRGINLPFETGTSNGVQPQNNIGNKLFDQSIHKDVPNNCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDNKGLAEPPDRCVPKENTAMVGSMNFSFGSNPSSENGVDNIMDVKGNIDDPINYFSSLNFEGCNFGVFNEFSQPPFEDSEGSFSFLMPSSFNYAPKSGGESCSDNL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04679 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
Vivi1g04679 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 473 IPR044300 GO:0010044|GO:0010447
Vivi1g04679 502 SMART c2h2final6 250 272 IPR013087 -
Vivi1g04679 502 SMART c2h2final6 299 332 IPR013087 -
Vivi1g04679 502 SMART c2h2final6 337 359 IPR013087 -
Vivi1g04679 502 Gene3D Classic Zinc Finger 234 303 - -
Vivi1g04679 502 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Vivi1g04679 502 SUPERFAMILY beta-beta-alpha zinc fingers 248 275 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04679 Vivi-Chr1 99967106 99969347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04679 218 500 C2H2 Transcription Factor Family AT1G34370 70.588 1.03e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04679 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04679 - - gmx:100170687 811.216