Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04677 ATGAATCCGACCGGAAGCTTGTGTGCTAACAACTGGGCAAGGTCTTCTTCCTTGGTCTCTCCTGGTAATGGATTACAGACAAATCTGTCATCGGATCTTTCCTCTTTCTACGGGATCGGTATTGAAATGCCTTTCAAAGAAATCAACCAGCCCTCTCGAAGTCAGTCTGTGATTCCAGGTGAATCTGACAAAGATATTAAGATCACTGATCAGGAAAGCAGTAAGCTTCCAGATTGGGATCCTAGTGCGATGTTGAATAATCTTTCGTTCCTGGAAGAGAAGATTCATCAGCTCCAGGAGGTAGTGCATTTGATTGCGAATAAGAAGTGCCAACCTTTTGAACAGCCTCGTGAACTCGTGACTCAAGAACAGCAACTCGTTACAGCTGATTTAACATCGATTATTGTTCAGTTGATCTCTACTGCAGGCACGAGTAATGGTGTTCAGCCACAGAATAATATTGGAAATAAATTGTTTGATCAGTCCATTCATAAAGATGTACCGAATAATTGTGAAATGGAGCAAAACCATAATATGGAAGAACATGAACATAAAGATGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCATATGAGATTTTACAACTAGAGAAAGAAGAAATCCTTGCACCCCACACACATTTCTGTACTATATGTGGCAAGGGGTTCAAGAGGGATGCGAACCTCCGTATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCGGCAGCCCTTGCAAAACCACATAAAGAAACTGGGTCCGAACCAAAGCTTATCAAGAGGTATTCGTGCCCCTACGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAAACTATTTTATGTGTGAAAAACCACTACAAAAGAACACACTGCGACAAGAGTTACACTTGCAGCAGATGCCACACCAAGAAGTTTTCAGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGCTCATGTGGTACAACATTTTCAAGGAAAGACAAGCTCTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGAAGATAATAAAGGACTTGCCGAGCCACCTGATCGATGTGTTCCCAAAGAAAATACAGCTATGGTAGGGAGCATGAACTTCAGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTCGATAACATCATGGACGTGAAAGGTAATATTGATGATCCTATCAATTACTTCTCATCTTTGAACTTTGAAGGCTGTAACTTCGGTGTGTTTAATGAATTCTCTCAACCTCCATTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGCCGAGTTCGTTTAATTATGCTCCTAAATCTGGCGGTGAATCATGTTCTGACAATCTGTAA 1410 0.417 MNPTGSLCANNWARSSSLVSPGNGLQTNLSSDLSSFYGIGIEMPFKEINQPSRSQSVIPGESDKDIKITDQESSKLPDWDPSAMLNNLSFLEEKIHQLQEVVHLIANKKCQPFEQPRELVTQEQQLVTADLTSIIVQLISTAGTSNGVQPQNNIGNKLFDQSIHKDVPNNCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDNKGLAEPPDRCVPKENTAMVGSMNFSFGSNPSSENGVDNIMDVKGNIDDPINYFSSLNFEGCNFGVFNEFSQPPFEDSEGSFSFLMPSSFNYAPKSGGESCSDNL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04677 469 SMART c2h2final6 217 239 IPR013087 -
Vivi1g04677 469 SMART c2h2final6 266 299 IPR013087 -
Vivi1g04677 469 SMART c2h2final6 304 326 IPR013087 -
Vivi1g04677 469 SUPERFAMILY beta-beta-alpha zinc fingers 215 242 IPR036236 -
Vivi1g04677 469 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Vivi1g04677 469 Gene3D Classic Zinc Finger 201 270 - -
Vivi1g04677 469 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 144 IPR044300 GO:0010044|GO:0010447
Vivi1g04677 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04677 Vivi-Chr1 99967106 99969655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04677 185 467 C2H2 Transcription Factor Family AT1G34370 70.588 5.22e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04677 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04677 - - gmx:100170687 747.658