Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04674 ATGAACATCAACATGAACATGGTCAGGTATGAATACACAACAACTTTCCTATTATTGTTTTTGTTCTGTCCTATGGTTCTCTCTTTGTTGTCTCAAAACCAAACACAAACCATGAACAATCTCTCCAATCTTGTTAGCAACCCTGATTGGAATACCAACAAGCACCCCAATCCATGTACATGGAAAGGGGTGACTTGTGACCATTCCAATTCATCTGTCATAAAAATTGTTCTGTCGGGCTCTTCTCTCTCTTCACAATCTCTTCCTGTTTTTTGCAAAATTGAAACTTTGCAGCACCTTGATGTTTCTAATAACCATCTGAACTCTATCCCAGATGGGTTTATTTCCGCTTGTGGAAAAATTGAGAGTTTAAAGCTTTTGAATTTTAGTGGAAATGTGTTGAGTGGCGTTTTGCCTACTTTTCATGGTTTTGGTGGATTGGAGACACTTGATATGTCTTTCAATAAGTTGAAAGGAAGCATAGGTTTGCAGTTAGATGGAATGGTTAGTCTCAAGTCTCTTAATCTCAGTAGCAATCGGTTCACTGAGAACATTCCAACTAACCTTGGAAGGTCTATGGTTTTGGAGGAGCTTGTGCTTTCAAACAATTTTTTTCAAGGAACAATCCCTGAACAAATTTTGAGCTATAAAAATTTGACTGTGATTGATTTTAAGGCAAATAGGCTTTCTGGGTCTATTCCTTTAAATATTGAAAATCTTTCCAAATTGGAAGTTTTGAGTCTTTCCTCTAATAGACTAGTTGGCAAAATCCCAACGACAATTGTGAACATAACAACTCTTGTAAGATTTGCAGCTAATCTAAATCAGTTTACTGGTTCTGTTCCTCCTGGAATTACAAAATTTCTAAATAGTTTGGATCTTAGTTACAATAATTTATCCGAGTCTATTCCAGAAGGCCTTTTATCTCCACCGCAACTAGTGCTTGTAGATTTGTCCAATAACAAGTTACAAGGGCCTGTACCTGCAAATATTTCACCTAGTTTAGTCAGGTTAAGATTAGGGGGAAATTCTCTGACAGGAGAGGTTCCTTTGATCACATGCAATGAAGCCGGACACAATTTGACTTACATGGAGCTGGATAATAACCACTTGACAGGTTTGATACCTTCTGAATTAGGTTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTGAGAATCAGTTAACTGGTGCATTGCCACCGGAACTTGGAAATCTTAACAGTCTTCAAGTCTTGCAGCTTCAAATGAACAAGCTTAATGGTACTATTCCGATTCAAATTTCTCAATTGCAAAAGTTGTCTACCTTGAATTTGAGCCGGAATTCTCTGGATGGACCGATTCCGTCTGAGATAACAGCAAACCTCACATTGCTTTACTTGCAAGGTAACAATCTTAACGGGTCTATACCTCCGTCCATTGGAAACTTGGTCAAACTTTTAGAACTTCAGCTTGGAGAAAACCAGCTAAGTGGTGATATTCCAAAAATGCCTCTGAGTTTGCAGATTTCGTTGAATCTCAGCAGCAATCACTTTAGTGGAAATATTCCTACAAGTTTCAGCGATTTGGTTAACCTGGAAGTTTTGGATCTATCAAACAACAATTTCTCTGGTGAAATTCCTGTGTCTCTAACCAAAATGGCAGCATTGACACAGTTGCAGCTTTCAAATAACCGTCTATCAGGAGACCTTCCATCATTTGCTTCATACGTTAATGTTGATACAAGAGGAACCAGTGTCAAGAACATTAGTAAAGTTCCAGATAAAATCTTTCCGACAGAAAAAAAGAGTGGGAAATCTGTTGTTGCCGCTATTCTTATTGCAATTGCTGCTGCTATTTTTGTGGTTGGTGTGGTCACTCTGCTGGTTGTATTGATTTCAAGACACTATTGTAGGGGTAACAACGAGCGTGTACAGGCAAGTGAAGGTGAAAATTTCGACCTTCAGATCATCCAGAGTAATTTGTTAACTACAAACGGGATCCATAGATCAAACATTGACTTCTCCAAGACCATGGAAGCTGTTGCCGAAACATCAAATGTAACTCTGAAAACCAAGTTTTCAACTTACTATAAGGCCCTTATGCCATCTGGATCGATCTATTTCGCCAAGAAGCTGAACTGGTGTGACAAAATCTTCCCTGTGAGTAGCCTTGATAGATTTGGGAAAGAGCTAGAAGGATTGGCAAAATTGAACAATTCAAATGTGATGGTTCCTCTAGGTTATATCGTGTCCACTAACAATGCTTATGTACTATACGAGTTTCAGTCGAACGGATCTCTCTTTGATGTGCTTCATGGAAGCATGGAAAACTCTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGTGTGGCTCAAGGTCTCTCCTTTCTTCATGGATGTGCCTCTGGTCCAATACTTCTCCTTGATTTGTCAAGTAAAAGTATTATGCTGAAATCACTCAAGGAGCCTCTAGTCGGCGATATTGAACACTACAAGGTGATTGATCCTTCAAAAAGTACTGGGAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTACATTCCTCCAGAGTATGCGTACACGATGAGAGTAACAACGGCAGGGAACGTGTATAGCTTTGGGGTCATTCTACTGGAATTGCTGACAGGAAAATCTGCAGTGACTGAGGGGACTGAATTGGTGAAGTGGGTTTCGCGTAACTCAAGAAATCAAGATTACTTTCTTGATTCAAATGTTAGTAGAACATCACAGGCTGTTAGAAACCAAATGCTTGCAATTCTGGAGATTGCTCTTGTTTGTGTAAGCACATCAACTGATGCAAGACCAAAGATGAAGACTGTGCTAAGAATGTTGCTGAATGCCAGATAA 2847 0.3934 MNINMNMVRYEYTTTFLLLFLFCPMVLSLLSQNQTQTMNNLSNLVSNPDWNTNKHPNPCTWKGVTCDHSNSSVIKIVLSGSSLSSQSLPVFCKIETLQHLDVSNNHLNSIPDGFISACGKIESLKLLNFSGNVLSGVLPTFHGFGGLETLDMSFNKLKGSIGLQLDGMVSLKSLNLSSNRFTENIPTNLGRSMVLEELVLSNNFFQGTIPEQILSYKNLTVIDFKANRLSGSIPLNIENLSKLEVLSLSSNRLVGKIPTTIVNITTLVRFAANLNQFTGSVPPGITKFLNSLDLSYNNLSESIPEGLLSPPQLVLVDLSNNKLQGPVPANISPSLVRLRLGGNSLTGEVPLITCNEAGHNLTYMELDNNHLTGLIPSELGSCKKLALLNLAENQLTGALPPELGNLNSLQVLQLQMNKLNGTIPIQISQLQKLSTLNLSRNSLDGPIPSEITANLTLLYLQGNNLNGSIPPSIGNLVKLLELQLGENQLSGDIPKMPLSLQISLNLSSNHFSGNIPTSFSDLVNLEVLDLSNNNFSGEIPVSLTKMAALTQLQLSNNRLSGDLPSFASYVNVDTRGTSVKNISKVPDKIFPTEKKSGKSVVAAILIAIAAAIFVVGVVTLLVVLISRHYCRGNNERVQASEGENFDLQIIQSNLLTTNGIHRSNIDFSKTMEAVAETSNVTLKTKFSTYYKALMPSGSIYFAKKLNWCDKIFPVSSLDRFGKELEGLAKLNNSNVMVPLGYIVSTNNAYVLYEFQSNGSLFDVLHGSMENSLDWASRYSIAVGVAQGLSFLHGCASGPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTTAGNVYSFGVILLELLTGKSAVTEGTELVKWVSRNSRNQDYFLDSNVSRTSQAVRNQMLAILEIALVCVSTSTDARPKMKTVLRMLLNAR 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04674 948 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 329 582 - -
Vivi1g04674 948 Pfam Leucine rich repeat 360 419 IPR001611 GO:0005515
Vivi1g04674 948 Pfam Leucine rich repeat 503 559 IPR001611 GO:0005515
Vivi1g04674 948 Pfam Leucine rich repeat 96 157 IPR001611 GO:0005515
Vivi1g04674 948 Gene3D Ribonuclease Inhibitor 452 595 IPR032675 -
Vivi1g04674 948 Gene3D Ribonuclease Inhibitor 88 451 IPR032675 -
Vivi1g04674 948 SMART LRR_typ_2 286 310 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 522 546 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 168 192 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 240 264 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 121 143 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 94 117 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 406 430 IPR003591 -
Vivi1g04674 948 SMART LRR_typ_2 452 476 IPR003591 -
Vivi1g04674 948 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 755 948 - -
Vivi1g04674 948 PRINTS Leucine-rich repeat signature 97 110 - -
Vivi1g04674 948 PRINTS Leucine-rich repeat signature 240 253 - -
Vivi1g04674 948 SMART LRR_sd22_2 216 239 - -
Vivi1g04674 948 SMART LRR_sd22_2 144 165 - -
Vivi1g04674 948 SMART LRR_sd22_2 522 543 - -
Vivi1g04674 948 SMART LRR_sd22_2 452 478 - -
Vivi1g04674 948 SMART LRR_sd22_2 240 266 - -
Vivi1g04674 948 Pfam Protein tyrosine and serine/threonine kinase 717 943 IPR001245 GO:0004672|GO:0006468
Vivi1g04674 948 SUPERFAMILY L domain-like 47 351 - -
Vivi1g04674 948 Gene3D Transferase(Phosphotransferase) domain 1 756 948 - -
Vivi1g04674 948 SUPERFAMILY RNI-like 252 565 - -
Vivi1g04674 948 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 32 187 - -
Vivi1g04674 948 Pfam Leucine rich repeat N-terminal domain 49 67 IPR013210 -
Vivi1g04674 948 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Vivi1g04674 948 Gene3D Phosphorylase Kinase; domain 1 648 754 - -
Vivi1g04674 948 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 643 754 - -
Vivi1g04674 948 Gene3D Ribonuclease Inhibitor 27 87 IPR032675 -
Vivi1g04674 948 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 217 944 - -
Vivi1g04674 948 ProSiteProfiles Protein kinase domain profile. 675 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04674 948 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 188 281 - -
Vivi1g04674 948 SUPERFAMILY Protein kinase-like (PK-like) 686 944 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04674 Vivi-Chr1 99948473 99951869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04674 147 944 Receptor kinase-like Gene Family AT2G41820 38.795 3.64e-147 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g04674 PK_Tyr_Ser-Thr 5.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04674 - - gmx:100796647 1174.84