Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04672 ATGGGAGATACCAACTATACTAGTAATGAGGAAGATAACAAAATTAGTGTTTTTTCTGATGAAATAGAAACAGAAGACAGTGCTTGTCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCTGCTGTCTTAAATGCTGCTATTCATCTCAATTTATTTGAGATCATTTCTAACTCATCACCACCTGGTGCTTTCATCTCACCTTCACAAATTGCTTCTCAACTCCCATCATCAGCCCAACACTCCGACTTGCCTAATAGGCTCGACCGAATGTTGCGCTTGCTCACTAGTTATTCCCTTCTCACTTCCTCCACTCGAACAGCCGATAATGGCAGCAGTATCGAGAGAGTTTATGGACTCTCGTCGGTCGGAAAACACCTTGTCCCTGATGAAAGTAGAGGCTACTTGGCTTCATTCACTACATTTCTATGTTATCCAGCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGGTTGATGAAGACATAGATTTGTTCAAGAAAGTGCATGGAGTGACAAAGTATGAATACATGGGACATGATAAGAAAATGAACCAAATATTCAACAAGTCAATGGTTGATGTATGTGCAACAGAGATGAAAAGAATGCTTGAAATATACAGTGGATTTGATGGAATATCAACACTGGTTGATGTGGGAGGTGGAAGTGGACAAAATCTGAAAATGATAATATCGAAATATCCATCAATAAAGGGAATTAATTTTGATCTGCCACAGGTAATTGAAAATGCAGCACCAATTCCAGGCATTCAGCATGTTGGAGGAGATATGTTTCAAAGTGTTCCACAAGGTGATGCCATCATACTAAAAGCTGTATGTCATAATTGGTCTGATGAAAAATGCATACAATTTTTAACCAAATGTCACAAAGCATTGTCACCTAATGGAAAAGTCATTATTGTGGAATTCATATTGCCAGAAGAACCAACCTCAACTCAAGAGTCAAAACTTGTTTCAACTATTGACAATCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTGAGAAACAGTATGAGAATTTGGGAAAAGTATCTGGATTTTCTAAATTCCAAGTTGCTTGCCGTGCTTTCTCATGTTTAGGAGTCATGGAATTTTACAAATGA 1134 0.3783 MGDTNYTSNEEDNKISVFSDEIETEDSACLSAMVLTTNLVYPAVLNAAIHLNLFEIISNSSPPGAFISPSQIASQLPSSAQHSDLPNRLDRMLRLLTSYSLLTSSTRTADNGSSIERVYGLSSVGKHLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKKVHGVTKYEYMGHDKKMNQIFNKSMVDVCATEMKRMLEIYSGFDGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAAPIPGIQHVGGDMFQSVPQGDAIILKAVCHNWSDEKCIQFLTKCHKALSPNGKVIIVEFILPEEPTSTQESKLVSTIDNLMFITVGGRERTEKQYENLGKVSGFSKFQVACRAFSCLGVMEFYK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04672 377 Coils Coil 373 377 - -
Vivi1g04672 377 Pfam O-methyltransferase domain 153 358 IPR001077 GO:0008171
Vivi1g04672 377 FunFam Caffeic acid O-methyltransferase 131 377 - -
Vivi1g04672 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 377 IPR016461 GO:0008168
Vivi1g04672 377 FunFam Caffeic acid 3-O-methyltransferase 9 128 - -
Vivi1g04672 377 PANTHER O-METHYLTRANSFERASE 32 367 IPR016461 GO:0008168
Vivi1g04672 377 Gene3D Vaccinia Virus protein VP39 187 366 IPR029063 -
Vivi1g04672 377 PIRSF O-mtase 9 377 IPR016461 GO:0008168
Vivi1g04672 377 Pfam Dimerisation domain 44 97 IPR012967 GO:0046983
Vivi1g04672 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 375 IPR029063 -
Vivi1g04672 377 SUPERFAMILY "Winged helix" DNA-binding domain 25 132 IPR036390 -
Vivi1g04672 377 CDD AdoMet_MTases 217 314 - -
Vivi1g04672 377 Gene3D - 40 205 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04672 Vivi-Chr1 99891790 99893073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04672 24 367 Monolignol Biosynthesis Gene Families AT5G54160 47.536 4.07e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04672 - - ag:AAB48059 615.15