Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04671 ATGGGAGATACCAACTTTAGTAATGAGGAAGATAACAAAATTAGTGTTTTTTCTGATGAAATAGAAACAGAAGACAGTGCTTGTCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCTGCTGTCTTAAATGCTGCTATTCATCTCAACTTGTTTGAGATCATTTCTAACTCATCACCACCTGGTGCTTTCATCTCACCTTCACAAATTGCTTCTCAACTCCCATCGTCTGCTCAACACTCCGACTTGCCTAATAGGCTCGACCGCATGTTGCGCTTGCTCACTAGTTATTCCCTTCTCACTTCCTCTACTCGAACAGCTGACAACGGTAGCACCGAGAGAGTTTATGGACTCTCGTCGGTCGGAAAACACCTTGTCCCTGATGAAAGTAGAGGCTACTTGGCTTCATTCACTACATTTCTATGTTATCCAGCATTGTTACAAGTTTGGATGAATTTTAAGGAAGCAGTGGTTGATGAAGACATAGATTTGTTCAAGAAAGTGCATGGAGTGACAAAGTATGAATACATGGGAAAAGATAAGAAAATGAACCAAATATTCAACAAGTCAATGGTTGATGTATGTGCAACAGAGATGAAAAGAATGCTTGAAATATACAGTGGATTTGATGGAATATCAACACTGGTTGATGTGGGAGGTGGAAGTGGACAAAATCTGAAAATGATAATATCGAAATATCCATCAATAAAGGGAATTAATTTTGATCTGCCACAGGTAATTGAAAATGCAGAACCAATTCCAGGTATTCAGCATGTTGGAGGAGATATGTTTCAAAGTGTTCCACAAGGTGATGCCATCATACTAAAGGCTGTATGTCATAATTGGTCTGATGAAAAATGCATTCAATTTTTAACCAAATGTCACAAAGCATTGTCACCAAATGGAAAAGTCATTATTGTGGAATTCATATTGCCAGAAGAACCAACCTCAACTCTAGAGTCAAAACTTGTTTCAACTATTGACAATCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTGAGAAACAGTATGAGAATTTGGGAAAACTATCTGGATTTTCTAAATTCCAAGTTGCTTGCCGTGCATTCTCATGTTTAGGAGTCATGGAATTTTACAAATGA 1128 0.3794 MGDTNFSNEEDNKISVFSDEIETEDSACLSAMVLTTNLVYPAVLNAAIHLNLFEIISNSSPPGAFISPSQIASQLPSSAQHSDLPNRLDRMLRLLTSYSLLTSSTRTADNGSTERVYGLSSVGKHLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKKVHGVTKYEYMGKDKKMNQIFNKSMVDVCATEMKRMLEIYSGFDGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAEPIPGIQHVGGDMFQSVPQGDAIILKAVCHNWSDEKCIQFLTKCHKALSPNGKVIIVEFILPEEPTSTLESKLVSTIDNLMFITVGGRERTEKQYENLGKLSGFSKFQVACRAFSCLGVMEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04671 375 FunFam Caffeic acid O-methyltransferase 129 375 - -
Vivi1g04671 375 Gene3D - 8 126 IPR036388 -
Vivi1g04671 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 375 IPR016461 GO:0008168
Vivi1g04671 375 FunFam Caffeic acid 3-O-methyltransferase 8 126 - -
Vivi1g04671 375 CDD AdoMet_MTases 215 312 - -
Vivi1g04671 375 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Vivi1g04671 375 Pfam Dimerisation domain 43 96 IPR012967 GO:0046983
Vivi1g04671 375 SUPERFAMILY "Winged helix" DNA-binding domain 24 130 IPR036390 -
Vivi1g04671 375 Gene3D Vaccinia Virus protein VP39 127 375 IPR029063 -
Vivi1g04671 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 373 IPR029063 -
Vivi1g04671 375 PIRSF O-mtase 9 375 IPR016461 GO:0008168
Vivi1g04671 375 PANTHER O-METHYLTRANSFERASE 31 365 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04671 Vivi-Chr1 99882621 99884043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04671 23 365 Monolignol Biosynthesis Gene Families AT5G54160 47.674 6.25e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04671 - - ag:AAB48059 620.928