Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04664 ATGACATCAACTCAAATTTCTGAGAGATCATCATCATCAATGGATATGGAATCAAGTGTTCCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTACCTCAACAGGAAAATCAACTCACTCAAAATTGATCTGGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGACATACAAGATAAATGCAAGCTAGGGTATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAGTATCCAACAGGAACAAGAACTAATAGAGCCACTGCAGCTGGATTTTGGAAAGCAACTGGAAGAGATAAAGCTGTAACTTCCAAAAATAGAATCATAGGAATGAGGAAAACACTTGTCTTCTACAAAGGACGTGCCCCCAATGGAAGGAAAACTGATTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGCATTTAAAAAGCCAAGTCCAAGTCACAGGCCAGGTTATGAACCATGGTATAGCAATCAACAACAACCACAATATTTCAGAGAAGATCAAATTCAAACCTATGCAACCACAAGACCTTTATCAATCACAGATCTTTTGCATGAAGGTACAAGTTTTAGTAGTCACCCTTTTAGCAATGATCAAAATTTTCTATCAAACCAAAACACTCTTGTTATGGACAAGCAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAATAGAATGTAGCCAACAACAACATCACATAAATGGTCTCATCACAAATGAAGAGTACTGCAGTGAAGATAGAAGCAATGATAATAACAATAATGGACAAGTGATTGATTGGAAAAGTTTGGACAACTTGTTCACTTCACAGTTTACAGATACAGCTAATTACTTTTCACATCAAAATAGCTTGCCATTGATGATATCTCATAGCAATAACCAGAATGAGCTACAATCTCAAAATCAAGTTAATAATATCTTAGGATGCTTTCCTGATTCATAA 1032 0.3682 MTSTQISERSSSSMDMESSVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDKCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNQQQPQYFREDQIQTYATTRPLSITDLLHEGTSFSSHPFSNDQNFLSNQNTLVMDKQQLIELPQLDSPTTIECSQQQHHINGLITNEEYCSEDRSNDNNNNGQVIDWKSLDNLFTSQFTDTANYFSHQNSLPLMISHSNNQNELQSQNQVNNILGCFPDS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04664 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 275 - -
Vivi1g04664 343 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g04664 343 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Vivi1g04664 343 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Vivi1g04664 343 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1g04664 343 ProSiteProfiles NAC domain profile. 20 169 IPR003441 GO:0003677|GO:0006355
Vivi1g04664 343 FunFam NAC domain-containing protein 29 173 - -
Vivi1g04664 343 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04664 Vivi-Chr1 99629035 99631821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04664 16 343 NAC Transcription Factor Family AT1G71930 54.386 1.11e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g04664 NAM 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04664 - - gmx:100811057 491.886