Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04652 ATGCCAACACCAACAACACCAACAACAACATCATCAACGCTTGGTGATGTAGAAACTCAAGACACAAACTCATCCAACACTCATGCCCCTCCCAAACAAAGCCCCCATGAATCGCGTGACCTTCCTCCTTTACTATCTTCTTACCCAATCACTCTTAAGTTCATGGACGTGGGATACAGATTAAAGATAGAGAACAAAAAAGGAGGGATCATCAAGAACTTCTTCACCGGACTCGAATCACAACCGTCTGATCAAAGATCAACGCTAGAGCGAATCATTCTCAACGGTGTAACGGGAATAGCTTACCCAGGAGAGATCCTAGCCATTCTAGGTCCATCTGGAAGCGGAAAATCCACGCTCCTAAACTCACTAGCAGGGAGACTCCATGGAAACGGTCTCACTGGAACAATCCTCGCTAACTCATCGAAACTCAACCGAACGATTCTCCGTCGAACCGGGTTCGTTACACAGGACGATATTCTCTACCCACACTTAACGGTTCGCGAGACACTGGTTTTCTGCTCCATGCTGCGTCTCCCGAGGACGCTTTCGCGGGAAACGAAGGTTGCAGCGGCGGAGTCAGTGATCATGGAGTTAGGTTTAAGCAAATGCGAGAACACTATCATTGGAAACAGTTTCATTCGCGGTGTTTCTGGTGGAGAGAGGAAGCGCGTGAGTATCGCTCACGAGATGTTGGTGGATCCGGCGCTTTTGATCTTGGATGAACCTACCTCTGGATTGGACTCCACCGCGGCGTACCGCCTTGTGTCGACGCTGGGCTCCTTGGCGAGGAAAGGGAAGACGGTGGTGACGTCAGTGCACCAGCCGTCAAGCCGTGTCTACCAGATGTTTGATAAAGTGCTTGTATTGTCAGAAGGGAACTGTATGTACTACGGCAAAGGAACCGACGCCATGAGGTATTTCGAGTCGGTTGGATTCGCGCCATCATTTCCGGTTAATCCGGCGGATTTTCTGCTCGATCTCGCTAACGGTGTTTGCCATGTAGATGGTGTAAGTGAAAAAGATCGACCAAACATAAAGCAAAATCTAATTCAATCATACAACAGAGAACTGGGTCCAAAGGTAAAATCTCTTTGCATGGACACAACAAATGTTTCAACAAAAGGAACTAACCCTGTAAGAAGCAACTCTTCGAAAGAACGTAGATATAATGACAGAGTTAGCATCTTTGATTGGTTTTACCAATTCAGTATTCTACTCCAGAGAAGCCTCAAAGAAAGAAAATATGAATCATTCAACATACTGAGAGTTTCTCAAGTCGTTGCTGCTGCATTACTAGCTGGTTTAATGTGGTGGCATTCAGACTATATGAACATTCAAGATAGGCTTGGATTACTCTTCTTCATTTCAATCTTTTGGGGTGTATTCCCATCTTTCAACTCTGTGTTTGCATTCCCTCAAGAGCGTGCAATCTTTGTAAAAGAGAGAGCTTCTGGTATGTACACACTATCATCCTATTTCATGGCTAGAATTGTCGGTGACCTACCAATGGAGCTTATTCTTCCAACAATTTTCCTCATTATTACATACTGGATGGGTGGATTGAAGCCAGATTTGTTGTCTTTTCTCTTGACATTGTTGGTTGTTCTTTTATTCGTGCTTGTATCACAAGGTCTTGGACTTGCTTTAGGTGCTGCAATAATGGATGCTAAACAAGCTTCCACAGTTGCAGCAGTTACAATGCTAGCATTTGTTTTAACAGGTGGATACTATGTTCATAAGGTTCCATCTTGTGTTGCTTGGATCAAATATATATCCACAACATTCTATAGTTACAGGCTTTTGACTAGAATTCAATATGGTGATGGCATAAGAATTGCTTACCTATTGGGTTGCAATCATGAGAGTAGTGGAGCTAATTGCAAATTTCTTGATGAAGATGTGGTGGGTCAAATAGGCCCAATGGGAAGCATTGGAGTGTTGTTTTTCATGTTTGTGTTTTACAGATTACTGGCTTACCTTGCCTTGAGACGTATCAAAAATTGA 2007 0.4385 MPTPTTPTTTSSTLGDVETQDTNSSNTHAPPKQSPHESRDLPPLLSSYPITLKFMDVGYRLKIENKKGGIIKNFFTGLESQPSDQRSTLERIILNGVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHGNGLTGTILANSSKLNRTILRRTGFVTQDDILYPHLTVRETLVFCSMLRLPRTLSRETKVAAAESVIMELGLSKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAYRLVSTLGSLARKGKTVVTSVHQPSSRVYQMFDKVLVLSEGNCMYYGKGTDAMRYFESVGFAPSFPVNPADFLLDLANGVCHVDGVSEKDRPNIKQNLIQSYNRELGPKVKSLCMDTTNVSTKGTNPVRSNSSKERRYNDRVSIFDWFYQFSILLQRSLKERKYESFNILRVSQVVAAALLAGLMWWHSDYMNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLIITYWMGGLKPDLLSFLLTLLVVLLFVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCVAWIKYISTTFYSYRLLTRIQYGDGIRIAYLLGCNHESSGANCKFLDEDVVGQIGPMGSIGVLFFMFVFYRLLAYLALRRIKN 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04652 668 Gene3D - 85 311 IPR027417 -
Vivi1g04652 668 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 317 IPR003439 GO:0005524
Vivi1g04652 668 Pfam ABC-2 type transporter 401 606 IPR013525 GO:0016020|GO:0140359
Vivi1g04652 668 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g04652 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 310 IPR027417 -
Vivi1g04652 668 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1g04652 668 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 660 - -
Vivi1g04652 668 Pfam ABC transporter 95 245 IPR003439 GO:0005524
Vivi1g04652 668 FunFam ABC transporter G family member 22 81 311 - -
Vivi1g04652 668 SMART AAA_5 103 294 IPR003593 GO:0016887
Vivi1g04652 668 Pfam ABC-2 type transporter 274 374 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04652 Vivi-Chr1 99339683 99346171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04652 75 299 Calmodulin-binding Proteins AT2G36910 27.953 2.15e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04652 K05681 - gmx:100812127 1014.6