Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04640 ATGGCTGGCAGTTCCGCACCTCCCTCCTCCACATCTTCTCACAACAATCCATCTTTCTTGCCCGATTTTCCTTCCCGAATTCCCCTTACTTCCGATCAGGTCAAGCACTGCACTGAAGCACTCGCGCTGTTGAAGAACAAACTCCTCGACCCTCACACCATCCCTCAAGAGTTCTTGCACTTGCAGTCTAACAGGATAACACTGAGTGAGACGACGAGAAGATGCAACGTTGCTCTTAATTCTGCTAATCTCAGTAAAAATCGATACAGAGATGTTATACCATTTGACAAGAACAGGGTTGTTCTTAATTCGAGTTCAGATTATAGGTCTGAAGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCTTCTCCTGGAACTGTGTCTGAGTTTATAGCCACGCAAGGTCCACTTCCACACACTTATGAGGATTTTTGGGAAATGATGATACAATATCACTGCCCTGCAATTGTGATGCTTACTAAGTTGGTAGATAATTACAAGATGGTGAAGTGTGGTGATTATTTTCAATCTGAGGATAGACCCAGAGAATTCGGGAATATCTCTCTTAAATGTAAATGGACGAAAACTACTGAAACTTCACTTGTGCTGCAGCATTTGGAAGTGAACCATAAAGAGGCAGAAGATACACCGTTATCTGTTTTTCATATTCAGTATCCCGAGTGGCCTGATCATGGAGTTCCAAACAATACTTTGGCTGTCCGTGAAATTTTGAAAAGATTATACCATTTGCCACCAAATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACGATTCAGAGAATACTTGCTGGTGATATGTCTGCTATAGATATTGCCAATACAATATCTGTGTTCAGGTCTCAGCGTACCGGAATGGTTCAGACACAGGATCAGTATATTTTTTGCTATGAAGCTATCATAGATGAACTAGAAGACCTTGTATCTCAACAGTAA 999 0.4214 MAGSSAPPSSTSSHNNPSFLPDFPSRIPLTSDQVKHCTEALALLKNKLLDPHTIPQEFLHLQSNRITLSETTRRCNVALNSANLSKNRYRDVIPFDKNRVVLNSSSDYRSEALGYINASFISTSSPGTVSEFIATQGPLPHTYEDFWEMMIQYHCPAIVMLTKLVDNYKMVKCGDYFQSEDRPREFGNISLKCKWTKTTETSLVLQHLEVNHKEAEDTPLSVFHIQYPEWPDHGVPNNTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAIDIANTISVFRSQRTGMVQTQDQYIFCYEAIIDELEDLVSQQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04640 332 Gene3D Protein tyrosine phosphatase superfamily 30 326 IPR029021 -
Vivi1g04640 332 CDD PTPc_plant_PTP1 115 319 - -
Vivi1g04640 332 FunFam Tyrosine-protein phosphatase non-receptor type 12 31 332 - -
Vivi1g04640 332 Pfam Protein-tyrosine phosphatase 83 322 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 326 IPR029021 -
Vivi1g04640 332 ProSiteProfiles PTP type protein phosphatase domain profile. 54 324 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 52 326 - -
Vivi1g04640 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 243 315 IPR000387 GO:0016311|GO:0016791
Vivi1g04640 332 SMART PTPc_3 53 326 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Vivi1g04640 332 PRINTS Protein tyrosine phosphatase signature 291 306 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 PRINTS Protein tyrosine phosphatase signature 114 121 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 PRINTS Protein tyrosine phosphatase signature 132 152 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 PRINTS Protein tyrosine phosphatase signature 307 317 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 PRINTS Protein tyrosine phosphatase signature 220 237 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 PRINTS Protein tyrosine phosphatase signature 258 276 IPR000242 GO:0004725|GO:0006470
Vivi1g04640 332 SMART ptp_7 221 323 IPR003595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04640 Vivi-Chr1 98980103 98986147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04640 32 330 Protein tyrosine phosphatase (PTP) family AT1G71860 68.227 4.69e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04640 - - gmx:548044 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04640 1 98980103 98986147 Vivi1g04640 1 98980103 98986147 ECH