Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04639 ATGGCTGGCAGTTCCGCACCTCCCTCCTCCACATCTTCTCACAACAATCCATCTTTCTTGCCCGATTTTCCTTCCCGAATTCCCCTTACTTCCGATCAGGTCAAGCACTGCACTGAAGCACTCGCGCTGTTGAAGAACAAACTCCTCGACCCTCACACCATCCCTCAAGAGTTCTTGCACTTGCAGTCTAACAGGATAACACTGAGTGAGACGACGAGAAGATGCAACGTTGCTCTTAATTCTGCTAATCTCAGTAAAAATCGATACAGAGATGTTATACCATTTGACAAGAACAGGGTTGTTCTTAATTCGAGTTCAGATTATAGGTCTGAAGCACTGGGGTATATCAATGCAAGCTTTATCTCGACCTCTTCTCCTGGAACTGTGTCTGAGTTTATAGCCACGCAAGGTCCACTTCCACACACTTATGAGGATTTTTGGGAAATGATGATACAATATCACTGCCCTGCAATTGTGATGCTTACTAAGTTGGTAGATAATTACAAGATGGTGAAGTGTGGTGATTATTTTCAATCTGAGGATAGACCCAGAGAATTCGGGAATATCTCTCTTAAATGTAAATGGACGAAAACTACTGAAACTTCACTTGTGCTGCAGCATTTGGAAGTGAACCATAAAGAGGCAGAAGATACACCGTTATCTGTTTTTCATATTCAGTATCCCGAGTGGCCTGATCATGGAGTTCCAAACAATACTTTGGCTGTCCGTGAAATTTTGAAAAGATTATACCATTTGCCACCAAATCTTGGCCCAATAGTGGTGCACTGCAGGTATTGGTAG 801 0.4295 MAGSSAPPSSTSSHNNPSFLPDFPSRIPLTSDQVKHCTEALALLKNKLLDPHTIPQEFLHLQSNRITLSETTRRCNVALNSANLSKNRYRDVIPFDKNRVVLNSSSDYRSEALGYINASFISTSSPGTVSEFIATQGPLPHTYEDFWEMMIQYHCPAIVMLTKLVDNYKMVKCGDYFQSEDRPREFGNISLKCKWTKTTETSLVLQHLEVNHKEAEDTPLSVFHIQYPEWPDHGVPNNTLAVREILKRLYHLPPNLGPIVVHCRYW 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04639 266 PRINTS Protein tyrosine phosphatase signature 132 152 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 PRINTS Protein tyrosine phosphatase signature 114 121 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 PRINTS Protein tyrosine phosphatase signature 220 237 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 PRINTS Protein tyrosine phosphatase signature 258 266 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 264 IPR029021 -
Vivi1g04639 266 SMART PTPc_3 53 265 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 ProSiteProfiles PTP type protein phosphatase domain profile. 54 266 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 52 263 - -
Vivi1g04639 266 Pfam Protein-tyrosine phosphatase 83 264 IPR000242 GO:0004725|GO:0006470
Vivi1g04639 266 Gene3D Protein tyrosine phosphatase superfamily 29 265 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04639 Vivi-Chr1 98980102 98983395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04639 32 263 Protein tyrosine phosphatase (PTP) family AT1G71860 65.517 4.12e-115 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04639 - - gmx:548044 399.438