Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04624 ATGGCCTCCTCTCAGGCCCAACATCGCTGTGTCTTCGTTGGGAATATACCGTATGATGCAACGGAAGAACAGCTTATTGAAATCTGCCAGGAAGTTGGTCCTGTAGTTTCTTTCAGATTAGTTATTGATAGAGAAACTGGGAAACCGAAAGGTTATGGATTTTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGTTATGAGATTAATGGTCGTCAATTACGTGTTGATTTTGCCGAAAACGATAAAGGGAACGATAGAAATAAAGATCAGGGTCGCGGAGGACCAGGAATGACGCCAATTGTTGACCCTCAGAAACAAGTAGGCATCCCAGCTGTCCAAGGGGAATCTGCTCAAGCTGCTCAACATCAACCTATTGGTCTTCATTTTGCCACAACAGCCGCAGCTGTCATGACTGCAGCTCTAGGTGGTGCTCAGACTGGCATCCAATCAAATCAAAATGGTTTGCAGAATCAGTCAGCATTCACAAATGATCCTTTAACTTCGCATCTCGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCTGAGGTTAAGGGAATGGCTACACACAACAAGGAATTGTCCCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCACCCCTTCAATGCTACAAATGCCAAATCTTAGACAAGTTTCAGATCAAACCTCACAGTTAATAAACGAAGGCCACATAGGTCAGACTCAGCAAACATTGGCTCAAAGCGTGGCTGGTCTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGCCAAGCCAACACTCTACCTCATAATTCTTTGGGTCCTAATCAATTAACCGCAAATCCAAGGCCTCCACTGCAGACTAGAATTCCCCTTCAACATCCCCCAAGCAACCATTTCGCACAGCCTGGAACAGGGCAGAATAATTTAATACTTCCTTCCGTACGTCCCCTGACTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAGCCAGTAAATTCATCTGCAATGAACCAGCAAATGCATGGCTCTTTCCTTCAGCATCCAGTCCATGTTGGAAGCTCAACTGTCTCACATAATCTTCAAATGGTTCGTCCAGATGCAAGCTTTCAGGCTGACCCCTCCATGTCATCTGGTACTTCCCAATTATTTAGTAAGGAAGGTGATAGATCTTCCAAAGCTCCTGAGGATTGGACCAAAAACAGTAGTAATTATTCAAACATGTCTGCGGGATTAGAGAATATAGGCATGACTCGTGATATTCCAGAATCCTTCAATCGCCCATTAAAGCTCACTAGATTGAATGATGGAAGGAAATCCTCTCTCGCATCCGGGACTTCAGACGTGCCTGTCTCCAACGGATCATCTCATGTTCCTGGAAGTAGCTTATTACCTGCACCTGCAGTTCCTAAAGCAGAAGTGCGGCACCCTGACCAGCAATCTTCACAGCTTCCATCTGATGTGGAGTCTGTTTTGCTGCAACAAGTACTGAATCTAACACCGGAGCAATTGAGTTCCCTGCCACCAGAGCAGCAACAACAGGTCATCCAACTGCAGAAAGCTCTTAAGCGAGATCAGATGCAACCTGCATAA 1662 0.4573 MASSQAQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGPGMTPIVDPQKQVGIPAVQGESAQAAQHQPIGLHFATTAAAVMTAALGGAQTGIQSNQNGLQNQSAFTNDPLTSHLAKMSRSQLTEIISEVKGMATHNKELSRQLLLSRPQLPKALFQAQIMLGMVTPSMLQMPNLRQVSDQTSQLINEGHIGQTQQTLAQSVAGLPPYGQSKLQSGLTPYIQEGQANTLPHNSLGPNQLTANPRPPLQTRIPLQHPPSNHFAQPGTGQNNLILPSVRPLTLGSLSVRPPIQPVNSSAMNQQMHGSFLQHPVHVGSSTVSHNLQMVRPDASFQADPSMSSGTSQLFSKEGDRSSKAPEDWTKNSSNYSNMSAGLENIGMTRDIPESFNRPLKLTRLNDGRKSSLASGTSDVPVSNGSSHVPGSSLLPAPAVPKAEVRHPDQQSSQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQKALKRDQMQPA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04624 553 SUPERFAMILY RNA-binding domain, RBD 6 104 IPR035979 GO:0003676
Vivi1g04624 553 FunFam Cleavage stimulating factor 64 160 235 - -
Vivi1g04624 553 Gene3D - 509 552 IPR038192 -
Vivi1g04624 553 CDD RRM_CSTF2_RNA15_like 9 85 - -
Vivi1g04624 553 MobiDBLite consensus disorder prediction 392 411 - -
Vivi1g04624 553 Pfam Transcription termination and cleavage factor C-terminal 515 547 IPR026896 GO:0031124
Vivi1g04624 553 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 549 - -
Vivi1g04624 553 MobiDBLite consensus disorder prediction 460 483 - -
Vivi1g04624 553 MobiDBLite consensus disorder prediction 288 319 - -
Vivi1g04624 553 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vivi1g04624 553 MobiDBLite consensus disorder prediction 392 430 - -
Vivi1g04624 553 FunFam Cleavage stimulating factor 64 2 118 - -
Vivi1g04624 553 MobiDBLite consensus disorder prediction 85 109 - -
Vivi1g04624 553 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vivi1g04624 553 Gene3D - 154 235 - -
Vivi1g04624 553 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vivi1g04624 553 Gene3D - 1 111 IPR012677 -
Vivi1g04624 553 Pfam Hinge domain of cleavage stimulation factor subunit 2 167 233 IPR025742 -
Vivi1g04624 553 MobiDBLite consensus disorder prediction 459 508 - -
Vivi1g04624 553 FunFam Related to Cleavage stimulation factor 506 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04624 Vivi-Chr1 98544704 98550069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04624 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.24e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04624 K14407 - gmx:100794399 733.021