Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04622 ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCCGGTTTTCGGTTTCACCCCACAGATGAGGAGTTGGTGATGTACTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTGATTTGTGAAACCGATGTTTACAAGTGGGATCCTGAGGATTTACCTGGGCAATCTTTCTTGAAAACTGGAGATAGGCAGTGGTTCTTTTTCTGTCATCGAGATAGAAAATATCCTAATGCTGCAAGGTCTAATCGAGCAACAAGACATGGCTACTGGAAAGCTACAGGAAAAGATCGTAACGTGATATTCAATTCTCGGTCAGTTGGAGTGAAAAAAACACTGGTTTTCTATATCGGCAGAGCTCCTAATGGCGAGCGAACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGTTTAAGAGATGCTACAATGTCAAGGGCTATTATGCACTATACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGCTGAGCGGGAGGCTCCAAATGCTGTTATGGACCCTCCTATTGGTCAGCTGCAGCCGTTGTTGGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGAACCAGATTATGTGAACGGTTATGTTGACTTTCCGCAGGTTGTTAATGAAGAAACACAAAGTATGGTCATGGGTCAGTTCTCTGAGGCCATGATATTCCCTGATCCTGGTGGAAATTTACAATCTAGCAGTCAACATTATGATGTGCAGCCCAGCTTTGACTTCAATCAGTCAGTTACTTCACACTTTCATATTTCTGAAGCACCCGAGGTCACTTCTGCTTCCAACATTCAAAGCGAGGAGGAGCCTGTCTTTTATGAGGACGGCTTCTTGGAAATCAATGATCTCTTTGATACCGAACCTTCAGTTTCAAATTCGGAAAAGCATAATGACGATCTCTTTGATAACTTGCAGTTTGAAGATGGGTTAAGTGAATTTGATATGTACCAAGATGCAGATATGTTTCTTTGTGGCCTGGAGCCTATTTGCGACGAAGCAGTTTCACATGCATATATGAATAACACTGGCAGCATTATTGAAAATCAGAGTCACCAGTTGCTGTCTGATGCAGAAGTTGCCAATCAAACTGTTGACGAATTCTGGATGCATGTTGAAAGAAACACCTGCAGTCCAACAGAAGACTTCAATGGTTCTTTCTCTCTAACAAATCCAGGTGTTGTGTGTGACTCTGTATGCTTTCCTACTGAAAGTGCTGAAAATCAAAGAAGTACTGGGGAAGATGTTGCTACTACAAGTAGATTGTCCTCTGCTCTTTGGGCTTTTGTTGATTCAATACCTACCACTCCTGCATCAGCGGCTGAAAATCCTTTGGTGAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCATGATGAAGATGAAGCCTAGTGACATCACTGCAGGTATTGATACTACAACTATGAAGAGAGCAGGCAGAAAGGGAGTCTCATTCCTTTTCTTCCCTATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGATACATCTCTCCTTGA 1701 0.4203 MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVICETDVYKWDPEDLPGQSFLKTGDRQWFFFCHRDRKYPNAARSNRATRHGYWKATGKDRNVIFNSRSVGVKKTLVFYIGRAPNGERTDWVMHEYTMDEEEFKRCYNVKGYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSAEREAPNAVMDPPIGQLQPLLDDEIDEIIKGMLDVEPVLEPDYVNGYVDFPQVVNEETQSMVMGQFSEAMIFPDPGGNLQSSSQHYDVQPSFDFNQSVTSHFHISEAPEVTSASNIQSEEEPVFYEDGFLEINDLFDTEPSVSNSEKHNDDLFDNLQFEDGLSEFDMYQDADMFLCGLEPICDEAVSHAYMNNTGSIIENQSHQLLSDAEVANQTVDEFWMHVERNTCSPTEDFNGSFSLTNPGVVCDSVCFPTESAENQRSTGEDVATTSRLSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSMMKMKPSDITAGIDTTTMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRYISP 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04622 566 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vivi1g04622 566 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Vivi1g04622 566 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Vivi1g04622 566 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 296 - -
Vivi1g04622 566 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vivi1g04622 566 FunFam Nac domain-containing protein 86 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04622 Vivi-Chr1 98528482 98532255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04622 4 564 NAC Transcription Factor Family AT1G34190 43.478 1.04e-139 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g04622 NAM 5.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04622 - - mtr:25485018 922.154