Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04604 ATGGCGGCTGCGATTTCTTCACAGATTGCTCAGTCTGCGGCTGTTGTGGCTCCGATGACGGCGGCATTAACCGGAGGACCGTTTACGAATGCATCGCTTTACGTAGGTGATCTCGAAGGGAGTGTGATCGAGGCTCAGCTTTTTGAACTGTTTAGCCAAGTGGCTCAGGTTGTGTCGATCAGGGTTTGCAGGGATCAGACCATGAGATCGTCTCTTGGTTACGCTTATGTTAACTTCACCAACGCTCAGGAAGCGGCCAATGCCAAGGAACTACTCAACTTCACTCCTTTGAATGGGAAGCCCATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGGAAAAGTGGATCTGGCAATGTGTTTATTAAGAACTTGGACGCATCAATTGATAACAAAGCATTACATGACACTTTTGCTGCCTTTGGCTCAGTTCTTTCTTGCAAGGTGGTTCTTGACAGCAGTGGTCAGTCAAAAGGACACGGTTTTGTGCAGTTTGACAATGAAGAAGATGCAAAGAGTGCCATCAAACAATTGAATGGAATGCTGATTAATGATAAACAAGTATATGTTGGATCTTTTGTTCGCCATCATGAAAGGGTTAGGACAAATGGATCACTCAAGTTCACTAATGTGTATGTCAAAAATTTGTCTGAAACCATGAATGATAAAGAACTTAAATATCTATTCGGCCCCTTTGGAACAATAACTAGTGCAGCAATCATGAAAGATACAAATGGGAAATCTAGAGGCTTTGGTTTTGTGAATTTCCAGAGTCCAGATTCAGCTGCTACTGCGGTTGAGAAATTAAATGGAACCACCATCAATGATGACGATGACAAGGTTTTATTTGTTGGGAGAGCTCAGAGAAAAGCAGAACGAGAGCATGAATTGAAAGTCAAATTTGAACAAGAAAGAATTAGCCGATATAAGAAATTACAAGGGGCTAATTTGTACTTGAAAAATCTTGATGACGGTTTTAGCGATGAAAAGTTGAAGGATCTGTTTTCTGATTTTGGAACTATAACTTCTTGCAAGGTGATGTTGGATTCACATGGTCACAGCAAGGGTTCCGGTTTTGTGGCCTTCTCAACTCCAGAGGAAGCAAGCAAAGCGTTAAATGAAATGAATGGGAAGTTGGTCGGAAGAAAGCCTCTGTTTGTTGCTGTGGCCCAACGCAAAGAAGAGAGGAAGGCCCAGCTGCAGGCTCAATTTGCTCATATTCGTGCCCCCGGTGGAATGGCATCTCTGGCTGCAGGAATTTCTGGATACCATCCGGGGTCTCCGAGACTTTCCCCTCAACAGTTATATTACGGTCAAGGCACACCTGGTTTCATACCACCTCAGCCTACTGGATTTGGTTTCCAGCAGCAAATCTTGTCTGGAATGCGACCTATTGTTGCTCCAAATGTTGCTCCAAATTTTGCTATGCCTTATCAACTCCAAAGACAAAGAATAGGTGCTCGACGGAATGGAAACCTCCAACACCTGCAGCAGAATCAAATGCTACAACGTAACTCCAACCAAGGGTACAGATATATGGCCAACAATCGAAATGGCGTGGATCCAATGTTGCCCATGACTTTTGATGGTCCAACTTCTATCGATAATCAGCGTCCGAGGTCTACATCACTTGCATCAGATTTAGCTTCTGCTACCCCAGAAAATCAGCGTATGATGTTGGGTGAACACCTGTATCCACTTGTGAAACATCTTACACCAAATCAATATACAGCTAAGGTGACAGGAATGTTGCTTGAAATGGATCGGTCAGAAGTAATTCATCTTATTGAATCTCCAAATGACTTAAAACAAAAAGTTTATGAGGCATTGCAAGTCCTCCATGATGCTGCACCGAGAGCTGAAGTCGGAGATCAACTTGGCTCGGTGTCATTGAATGAATGA 1905 0.4331 MAAAISSQIAQSAAVVAPMTAALTGGPFTNASLYVGDLEGSVIEAQLFELFSQVAQVVSIRVCRDQTMRSSLGYAYVNFTNAQEAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDASIDNKALHDTFAAFGSVLSCKVVLDSSGQSKGHGFVQFDNEEDAKSAIKQLNGMLINDKQVYVGSFVRHHERVRTNGSLKFTNVYVKNLSETMNDKELKYLFGPFGTITSAAIMKDTNGKSRGFGFVNFQSPDSAATAVEKLNGTTINDDDDKVLFVGRAQRKAEREHELKVKFEQERISRYKKLQGANLYLKNLDDGFSDEKLKDLFSDFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAQFAHIRAPGGMASLAAGISGYHPGSPRLSPQQLYYGQGTPGFIPPQPTGFGFQQQILSGMRPIVAPNVAPNFAMPYQLQRQRIGARRNGNLQHLQQNQMLQRNSNQGYRYMANNRNGVDPMLPMTFDGPTSIDNQRPRSTSLASDLASATPENQRMMLGEHLYPLVKHLTPNQYTAKVTGMLLEMDRSEVIHLIESPNDLKQKVYEALQVLHDAAPRAEVGDQLGSVSLNE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04604 634 SMART rrm1_1 317 389 IPR000504 GO:0003723
Vivi1g04604 634 SMART rrm1_1 211 286 IPR000504 GO:0003723
Vivi1g04604 634 SMART rrm1_1 120 192 IPR000504 GO:0003723
Vivi1g04604 634 SMART rrm1_1 32 105 IPR000504 GO:0003723
Vivi1g04604 634 SUPERFAMILY PABC (PABP) domain 499 618 IPR036053 GO:0003723
Vivi1g04604 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Vivi1g04604 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 290 IPR000504 GO:0003723
Vivi1g04604 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 277 IPR000504 GO:0003723
Vivi1g04604 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 385 IPR000504 GO:0003723
Vivi1g04604 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Vivi1g04604 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Vivi1g04604 634 Gene3D - 26 119 IPR012677 -
Vivi1g04604 634 FunFam Polyadenylate-binding protein 299 404 - -
Vivi1g04604 634 CDD RRM2_I_PABPs 117 192 IPR045305 -
Vivi1g04604 634 SUPERFAMILY RNA-binding domain, RBD 30 195 IPR035979 GO:0003676
Vivi1g04604 634 Gene3D - 204 312 IPR012677 -
Vivi1g04604 634 SMART poly_2 553 617 IPR002004 GO:0003723
Vivi1g04604 634 Pfam Poly-adenylate binding protein, unique domain 549 614 IPR002004 GO:0003723
Vivi1g04604 634 Gene3D - 538 618 - -
Vivi1g04604 634 FunFam Polyadenylate-binding protein 117 200 - -
Vivi1g04604 634 SMART rrm2_1 120 192 IPR003954 GO:0003676
Vivi1g04604 634 SMART rrm2_1 317 389 IPR003954 GO:0003676
Vivi1g04604 634 SMART rrm2_1 32 105 IPR003954 GO:0003676
Vivi1g04604 634 SMART rrm2_1 211 285 IPR003954 GO:0003676
Vivi1g04604 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Vivi1g04604 634 FunFam Polyadenylate-binding protein 24 116 - -
Vivi1g04604 634 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 614 IPR006515 GO:0003723
Vivi1g04604 634 CDD RRM3_I_PABPs 209 291 - -
Vivi1g04604 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Vivi1g04604 634 Gene3D - 120 193 IPR012677 -
Vivi1g04604 634 SUPERFAMILY RNA-binding domain, RBD 210 397 IPR035979 GO:0003676
Vivi1g04604 634 CDD RRM4_I_PABPs 315 393 - -
Vivi1g04604 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 619 IPR002004 GO:0003723
Vivi1g04604 634 PANTHER RNA BINDING PROTEIN 29 93 - -
Vivi1g04604 634 Gene3D - 313 412 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04604 Vivi-Chr1 98396818 98401441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04604 30 627 Eukaryotic Initiation Factors Gene Family AT1G71770 54.459 0.0 650