Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04595 ATGGAAAGTACTGTCTCTCATAGTCCTAGTGTCACTACTTTCTTGTTTTTCTTACTGTTTTTTTGTGTGATGGAAGTGAGTTCTATTTCACCTGATGGACAAGCACTTCTTTCTCTTGCAACTTCATCTCCTTCTCTTCTCTCTTCATGGAACCCTTCAGCCTCAACACCATGTTCATGGAAAGGTGTAACTTGTTCACCACAATCTAGAGTGATTTCACTTTCTATCCCTGACACTTTTCTCAATCTCTCTTCTTTACCACCTCAACTATCCTCTTTAACAATGCTTCAGCTTCTGAATCTCTCTTCCACCAATCTCTCTGGCTCAATCCCTCCCTCTTTTGGTCAACTCTCTCATCTTCAACTCCTTGACCTCTCCTCAAACTCTCTCACTGGTTCAATCCCTAACGAACTTGGAAACTTGTATTCTCTTCAATTCATTTTCTTGAACTCAAACAGGTTAACAGGAACCATTCCACAACAGTTTTCGAATCTCACTTCACTTGAAGTTCTTTGTCTTCAAGATAATCTTCTCAATGGTTCAATCCCTTCACAGCTAGGCTCCTTGAAATCTCTTCAACAGTTTAGGATTGGTGGTAACCCTTATCTCACAGGAGAACTTCCTCCACAGTTAGGACTATTAACCAACCTCACCACATTCGGTGCAGCCGCAACTTCGCTTTCAGGTTCGATTCCTTCCACGTTCGGAAACTTGGTCAATCTACAAACTCTAGCACTTTATGATACTGAAATTTCTGGTTCAATACCATCAGAACTTGGTTCATGTTCCGAGTTGAGAAATATTTATTTACATATGAACAATCTCAGTGGCTCTATCCCTCATGAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGAAACACATTATCTGGTGAAATCCCTTCTGAGATTTCCAACTGTTCATCGTTAGTTATATTTGATGTATCTTCTAATGATCTATCTGGCGAAATACCGGGGGATTTCGGGAAGCTAGTTGTTCTCGAACAGCTTCATTTGTCTGATAACTCGCTCAGCGGCGAAATACCGTGGCAGTTGAGTAACTGCACAAGCCTCGCAACGGTTCAGCTCGACAAGAATCAGTTATCAGGTAGGATTCCTTATCAGGTTGGGAAGTTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCTTCTTCTTTCGGAAACTGTAGTGAACTTTATGCACTTGATCTTTCAAGGAATAAGCTAACAGGTTCGATTCCCGAAGAGATTTTCGGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAACTCATTAACAGGAAAGTTGCCAGCAAGTGTTGCAAATTGTCAGTCTTTGGTTAGATTGAGGGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGCCAGTTGCAGAATCTGGTTTTTCTTGACTTGTACATGAATCATTTCTCCGGAAGATTACCGGTTGAGATTGCGAATATTACAGTTCTTGAGCTTTTAGATGTGCATAACAACTATCTCGGTGGAGAAATTCCGTCGCTGATCGGTGAACTTGAAAATTTGGAGCAGCTTGATCTAAGTAAGAATGGTTTGACAGGTGAAATTCCTTGGAGTTTCGGAAACTTGAGTTATTTGAATAAGCTTATTCTCAACAATAATTTGTTAACAGGTTCAATGCCAAAATCTGTTCGAAATTTGCAGAAGCTGACTCTATTGGATTTGAGTTATAACAGCTTATCTGGTAGCATACCTCAAGAGATTGGTCATGTTACAAGCTTAACCATAAGTTTGGATTTGAGCTCAAATGCATTCACCGGCGAAATTCCTGATTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCAAGGAACGCGCTTCATGGTGGAATTAAGGTTCTTGGTTCTTTAACTAGTCTTACTTCGCTTAATATCTCTTACAACAACTTCTCAGGTCCTATTCCAGTAACTCCATTTTTCAAAACTATAACTTCTAGTTCATATCTTCAGAACTTTCATTTATGTCAGTCTATTGATGGTACTACATGTTCTTCGAGTCTGGTTCAAAAAAATGGTTTAAAATCCGCTAAAACCGTGGCTATGATCACGATTATTCTAGCTTCGGTTACCATAATTGTCATTGCGTCGTGGATTCTAGTAACTCGTAGTAATCATCGATACATGGTTGAGAAAGCTTTGAGGATATCAGGTTCCGCGTTAGGAGCCGAGGATTTCTCATATCCTTGGACTTTCATACCATTTCAGAAACTGAACTTCAGCATAGAAAACATCTTGGATTGCTTGAAAGACGAAAATGTGATTGGAAAAGGTTGTTCTGGTGTTGTTTACAAGGCTGAGATGCCGAACGGAGAAGTAATAGCAGTGAAGAAGCTTTGGAAAACAAGCAAAGGAGATGAAATGGTGGATTCTTTCGCTGCTGAGATTCAGATTCTCGGCTACATTCGGCATAGAAACATCGTAAGGCTCATAGGCTATTGTTCTAATGGGAGTGTTAAGCTTCTTCTCTATAACTTCATCCAAAATGGTAATCTAAGACAGCTCTTGGAAGGAAATAGGAACTTAGACTGGGAAACTCGATACAAGATAGCTGTTGGTTCGGCGCAAGGTCTAGCTTACCTTCATCATGATTGTGTTCCAACAATTCTCCACAGAGATGTTAAGTGCAATAACATACTTTTAGATTCCAAATTCGAGGCTTATCTTGCAGATTTCGGCCTTGCAAAGCTAATGAATTCGCCGAATTATCATCAAGCAATGTCCAGAGTTGCTGGTTCCTATGGCTATATTGCCCCAGAGTATGGCTACACGATGAACATAACCGAGAAGAGCGACGTGTACAGTTACGGGGTGGTTTTACTCGAGATACTAAGTGGAAGAAGTGCGGTTGAATCTCGACATATTGGAGATGATGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTTGAACCAGCAGTGTCAATACTAGACACAAAGCTGCAAAGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCAATGTTTTGCGTGAATTCTTCGCCAGTTGAACGGCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAGAGTCAGCCTCATGAGGAGATGGGGAAGACTTCACAACCTTTGATCAAGCAGTCCTCAACTCAATGCTGA 3234 0.4057 MESTVSHSPSVTTFLFFLLFFCVMEVSSISPDGQALLSLATSSPSLLSSWNPSASTPCSWKGVTCSPQSRVISLSIPDTFLNLSSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPNELGNLYSLQFIFLNSNRLTGTIPQQFSNLTSLEVLCLQDNLLNGSIPSQLGSLKSLQQFRIGGNPYLTGELPPQLGLLTNLTTFGAAATSLSGSIPSTFGNLVNLQTLALYDTEISGSIPSELGSCSELRNIYLHMNNLSGSIPHELGKLQKLTSLLLWGNTLSGEIPSEISNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLSGEIPWQLSNCTSLATVQLDKNQLSGRIPYQVGKLKVLQSFFLWGNLVSGTIPSSFGNCSELYALDLSRNKLTGSIPEEIFGLQKLSKLLLLGNSLTGKLPASVANCQSLVRLRVGENQLSGEIPKEIGQLQNLVFLDLYMNHFSGRLPVEIANITVLELLDVHNNYLGGEIPSLIGELENLEQLDLSKNGLTGEIPWSFGNLSYLNKLILNNNLLTGSMPKSVRNLQKLTLLDLSYNSLSGSIPQEIGHVTSLTISLDLSSNAFTGEIPDSMSALTQLQSLDLSRNALHGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFKTITSSSYLQNFHLCQSIDGTTCSSSLVQKNGLKSAKTVAMITIILASVTIIVIASWILVTRSNHRYMVEKALRISGSALGAEDFSYPWTFIPFQKLNFSIENILDCLKDENVIGKGCSGVVYKAEMPNGEVIAVKKLWKTSKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNFIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPTILHRDVKCNNILLDSKFEAYLADFGLAKLMNSPNYHQAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESRHIGDDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKSQPHEEMGKTSQPLIKQSSTQC 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04595 1077 Gene3D Ribonuclease Inhibitor 376 472 IPR032675 -
Vivi1g04595 1077 Gene3D Ribonuclease Inhibitor 473 567 IPR032675 -
Vivi1g04595 1077 Gene3D Transferase(Phosphotransferase) domain 1 855 1074 - -
Vivi1g04595 1077 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Vivi1g04595 1077 Gene3D Phosphorylase Kinase; domain 1 757 854 - -
Vivi1g04595 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 423 - -
Vivi1g04595 1077 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515
Vivi1g04595 1077 PRINTS Leucine-rich repeat signature 120 133 - -
Vivi1g04595 1077 PRINTS Leucine-rich repeat signature 623 636 - -
Vivi1g04595 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 753 854 - -
Vivi1g04595 1077 Gene3D Ribonuclease Inhibitor 568 693 IPR032675 -
Vivi1g04595 1077 Gene3D Ribonuclease Inhibitor 182 278 IPR032675 -
Vivi1g04595 1077 Gene3D Ribonuclease Inhibitor 279 375 IPR032675 -
Vivi1g04595 1077 SMART serkin_6 777 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04595 1077 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 309 1051 - -
Vivi1g04595 1077 SUPERFAMILY L domain-like 434 677 - -
Vivi1g04595 1077 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 29 185 - -
Vivi1g04595 1077 SUPERFAMILY RNI-like 99 501 - -
Vivi1g04595 1077 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 424 696 - -
Vivi1g04595 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 855 1069 - -
Vivi1g04595 1077 Pfam Protein kinase domain 779 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04595 1077 Gene3D Ribonuclease Inhibitor 32 181 IPR032675 -
Vivi1g04595 1077 ProSitePatterns Protein kinases ATP-binding region signature. 783 806 IPR017441 GO:0005524
Vivi1g04595 1077 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
Vivi1g04595 1077 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Vivi1g04595 1077 Pfam Leucine rich repeat 385 443 IPR001611 GO:0005515
Vivi1g04595 1077 ProSiteProfiles Protein kinase domain profile. 777 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04595 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Vivi1g04595 1077 SMART LRR_typ_2 550 573 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 286 310 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 93 116 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 165 189 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 334 358 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 117 140 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 623 650 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 406 430 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 238 262 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 526 549 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 141 164 IPR003591 -
Vivi1g04595 1077 SMART LRR_typ_2 574 598 IPR003591 -
Vivi1g04595 1077 SUPERFAMILY Protein kinase-like (PK-like) 759 1051 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04595 Vivi-Chr1 98228420 98232505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04595 28 1071 Receptor kinase-like Gene Family AT5G56040 45.335 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g04595 Pkinase 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04595 - - tpra:123903867 1878.99