Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04575 ATGACGGAATCGGAAACAGGAACACCAACGGCGGCGTCAGTGCCACCAACACCGGAAACTCCGGGAGGGCCATTATTCTCGTCGGTGAGAATTGATTCACTTGACCGTGAGTCTTTTGCAATGGGGAGGTGCAACATGTGTTTGCCGGGTGCTAAAAGCAATGGTTGCATCGGTGTTCGAATTCCCAGTGTCTCTCTCACTCAGAAGATTGGAGCAGAGTTTGTAGGAACATTCATACTGATCTATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACGCTGGAGCAGAAACACTCATGGGAAATGCAGCCTGTGCTGGTTTAACAGTCATGTTCATTATTCTCTCAATTGGTCATATCTCAGGTGCACATCTCAATCCATCACTCACCATTGCGTTCGCGGCGTTTCGCCATTTTCCATGGGCACATGTTCCGGCCTACATTGCAGCACAAGTCTCTGCATCGATCTGCGCTTGTTATGCTCTCAAAGTTGTTTATCACCCTTTCCTCTCTGGTGGTGTAACTGTCCCTACTGTTAGCATTGGACAAGCTTTTGCATCTGAGTTTATCATCACCTTTATTCTCTTGTTCGTTGTCACTGCTGTTGCTACTGATACTCGCGCGGTTGGTGAATTGGCTGGTATTGCTGTTGGAGCTACAGTTTTGCTCAACATTCTCATTACAGGGCCAACAAGTGGTGGTTCGATGAACCCAGTGCGCACCTTAGGTCCAGCGGTTGCAGCAGGAAACTACAAACATATCTGGATATATTTGGTGGCGCCGACGCTTGGTGCGCTTGCTGGTTCTGGAGTTTATACGCTTGTCAAGCTGCGTGACGATGAAGCTGAACCGGTGCAACCAGTCAGAAGTTTCCGTCGCTAG 885 0.4859 MTESETGTPTAASVPPTPETPGGPLFSSVRIDSLDRESFAMGRCNMCLPGAKSNGCIGVRIPSVSLTQKIGAEFVGTFILIYAATAGPIVNNKYAGAETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKVVYHPFLSGGVTVPTVSIGQAFASEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILITGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGVYTLVKLRDDEAEPVQPVRSFRR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04575 294 FunFam Aquaporin NIP2-1 57 287 - -
Vivi1g04575 294 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 PRINTS Major intrinsic protein family signature 144 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 PRINTS Major intrinsic protein family signature 68 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 PRINTS Major intrinsic protein family signature 107 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 ProSitePatterns MIP family signature. 125 133 IPR022357 -
Vivi1g04575 294 Gene3D Glycerol uptake facilitator protein. 59 287 IPR023271 -
Vivi1g04575 294 Pfam Major intrinsic protein 63 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04575 294 SUPERFAMILY Aquaporin-like 64 282 IPR023271 -
Vivi1g04575 294 PANTHER AQUAPORIN NIP2-1 54 282 IPR034294 -
Vivi1g04575 294 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04575 Vivi-Chr1 97558374 97565229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04575 25 294 Major Intrinsic Protein MIP AT4G10380 72.202 2.31e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04575 K09874 - gmx:100804356 500.745