Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04574 ATGCCGGAATTAGACAGAGGAACATCAACGGAGTTGCCGGTGACACCGGACACACCGGGAGGACCATTATTTTCGTCGGTGAGAATTGATTCTCCTGAACGTGATTCTTTTACAATGCCGAGGTGCAACATGTGCATGCCCAAAAATATGGGTGTTCGAATTCCGAGTGTTTCTCTAACTCAGAAGATTGGAGCAGAGTTTGTAGGAACATTCATACTGATATATGTAGCAACAGCAGGACCAATAGTGAACAACAAATACGAAGGTGTAGAAACGCTTATAGGAAATGCAGCCTGTGCTGGTTTAACAGTCATGGCAATTATTTTCTCAATTGGTCATATCTCAGGCGCACACCTCAATCCGGCACTCACCATTGCATTTGCGGCGTTTCGCCATTTTCCATGGGCACATGTTCCTGCCTACATTGCAGCGCAAGTCTCTGCATCGATCTGCGCTGCTTTTGCTCTCAAAACTATTTATCGTCCTTTCCTCTCTGGTGGTGTTACTCTCCCTACCGTTAGCGTTGGACAAGCTTTTGCAACCGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGCAACTGCTGTTGCTACGGATACTCGCGCAGTTGGTGAAATGGCTGGTATTGCGGTTGGAGCTACAGTTATAGTCAACATTCTGATCTCAGGGCCAACAAGTAGTGGTTCAATGAACCCGGTTCGCACCTTAGGTCCAGCCATTGCAGCAGGAAACTACAAAAATATCTGGATATATTTTGTGGCGCCGACGCTTGGTGCGCTTGCTGGTTCTGGAGCTTATACGCTTGTCAAGCTCCGTGAAGAAGACAACAACGAAGCTGAACAGCAGCCGCTACCGGTTAGGAGCTACAGTCACTAG 876 0.468 MPELDRGTSTELPVTPDTPGGPLFSSVRIDSPERDSFTMPRCNMCMPKNMGVRIPSVSLTQKIGAEFVGTFILIYVATAGPIVNNKYEGVETLIGNAACAGLTVMAIIFSIGHISGAHLNPALTIAFAAFRHFPWAHVPAYIAAQVSASICAAFALKTIYRPFLSGGVTLPTVSVGQAFATEFIITFILLFVATAVATDTRAVGEMAGIAVGATVIVNILISGPTSSGSMNPVRTLGPAIAAGNYKNIWIYFVAPTLGALAGSGAYTLVKLREEDNNEAEQQPLPVRSYSH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04574 291 MobiDBLite consensus disorder prediction 1 26 - -
Vivi1g04574 291 FunFam Aquaporin NIP2-1 51 281 - -
Vivi1g04574 291 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 Gene3D Glycerol uptake facilitator protein. 47 283 IPR023271 -
Vivi1g04574 291 Pfam Major intrinsic protein 56 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi1g04574 291 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Vivi1g04574 291 PANTHER AQUAPORIN NIP2-1 42 274 IPR034294 -
Vivi1g04574 291 SUPERFAMILY Aquaporin-like 56 278 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04574 Vivi-Chr1 97551471 97553669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04574 23 289 Major Intrinsic Protein MIP AT4G10380 67.500 2.72e-129 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04574 K09874 - gmx:100804356 439.884