Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04572 ATGCCTCCTCAAAAGGATCCAGATAAGTTCTTCATGTCTATCAGTAATGGAGAGAATAAGCATGTCGACTATTTACGCGCTTTATATGAGGGTTGCATTGCTGGAGGTGTTGCTGGTGTTGCTGTAGAGGCAGCTTTATACCCCATTGATACCATCAAAACACGGCTACAGGTTGCTCGTGGTGGACTAAAAATTGATTTCAAAGGTTTGTATTCTGGATTGGCTGTAAACCTTGCTGGTTCCTTACCAGCTTCTGCAATTTTTATTGGTGTGTATGAACCAGCAAAGCAGAAATTGCTGCAGATCTTCCCTGAGAATCTAAATGCTCTGGCTCATATTGCTGCAGGTACTATTGCAGGAGCTGCTTCTTCGCTTGTTCGTGTTCCTACTGAGGTTGTTAAGCAAAGAATACAAACCGGTCAGTTCAAATCAACCTCATCTGCTCTCCGTCTTATCATTGCTAATGAGGGTTTTAAAGGTCTTTTTGCGGGATATAGATCTTTCTTATTGCGAGATTTACCGTTTGATGCATTAGAATTATGCATCTACGAACAGCTCCGTATCGGGTATAAAGTAGCGGCAAAAAGAGATCTGAATGATCCAGAGAATGCTATGATTGGTGCTTTTGCCGCTGCAATAACTGGAGCAGTTACAACTCCACTTGATGTAATAAAAACCAGATTGATGGTTCAGGGAACACAAAAACATTACAAAGGCATTTGTGATTGTGTTAGGACAATAGTTAAAGAAGAAGGACCTAATGCTCTTTTTAAGGGTATGGGGCCAAGAGTGCTGTGGATAGGAATAGGGGGTTCAATATTTTTTGGTGTTCTTGAGAAGACAAAGAAAACTCTTGCTCAGAGGAACCCTCAAACTGATGCTGAGAAGTGA 891 0.4141 MPPQKDPDKFFMSISNGENKHVDYLRALYEGCIAGGVAGVAVEAALYPIDTIKTRLQVARGGLKIDFKGLYSGLAVNLAGSLPASAIFIGVYEPAKQKLLQIFPENLNALAHIAAGTIAGAASSLVRVPTEVVKQRIQTGQFKSTSSALRLIIANEGFKGLFAGYRSFLLRDLPFDALELCIYEQLRIGYKVAAKRDLNDPENAMIGAFAAAITGAVTTPLDVIKTRLMVQGTQKHYKGICDCVRTIVKEEGPNALFKGMGPRVLWIGIGGSIFFGVLEKTKKTLAQRNPQTDAEK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04572 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 98 IPR018108 -
Vivi1g04572 296 Pfam Mitochondrial carrier protein 202 288 IPR018108 -
Vivi1g04572 296 Pfam Mitochondrial carrier protein 30 61 IPR018108 -
Vivi1g04572 296 Pfam Mitochondrial carrier protein 107 187 IPR018108 -
Vivi1g04572 296 PRINTS Mitochondrial carrier protein signature 112 125 IPR002067 GO:0055085
Vivi1g04572 296 PRINTS Mitochondrial carrier protein signature 125 139 IPR002067 GO:0055085
Vivi1g04572 296 PRINTS Mitochondrial carrier protein signature 213 231 IPR002067 GO:0055085
Vivi1g04572 296 PRINTS Mitochondrial carrier protein signature 257 275 IPR002067 GO:0055085
Vivi1g04572 296 PRINTS Mitochondrial carrier protein signature 164 184 IPR002067 GO:0055085
Vivi1g04572 296 SUPERFAMILY Mitochondrial carrier 30 279 IPR023395 -
Vivi1g04572 296 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 30 296 - -
Vivi1g04572 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 284 IPR018108 -
Vivi1g04572 296 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 28 293 - -
Vivi1g04572 296 Gene3D Mitochondrial carrier domain 29 295 IPR023395 -
Vivi1g04572 296 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 189 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04572 Vivi-Chr1 97533503 97537211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04572 101 290 Chloroplast and Mitochondria Gene Families AT1G07030 30.964 5.29e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04572 K15111 - gmx:100800051 428.713