Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04556 ATGGGCTGTGTTCAAGCCAAACCATCACAAGAATCTGATGAAGGTAATTACAGTGGACTAAACAGATTCAAAATGGAAAATGGGTATGTTCCAAGTTCTGATTTTGTTGCTCACAGAAGATCCACTGGTCAGAGTCAAAAACATGTTCTTGACCAGACTAACAACTATGATCATCATCGTGTTTATGAGAAAGAGAAACAACCCAGAAAACATAAAGTAGTTGTTGATTCTAGTAGTGTTGCTGGAAAAGGAAAGAGAAATGGTGAATTGAAAGATAGTAAGAAGCAGTTGAACAAGTGTTTTGATGATGAGATGGTTGATGGATGGCCTAAATGGTTAGTTGATAATGTTCCTTCTCATGGGTTGGATGGTTTGGTTCCAAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATCGAGACACGGGTGATATCGTGGCATTAAAAAAGGTCCGGTTCAATACGTCGGAGCCTGAAAGCATTAAGTTTATGGCAAGAGAAATTGCGATATTACAGAGATTGGATCATCCGAATATAGTGAAACTTAAAGGGTTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGATTTCATGCCCACAGATTTATCAAGAATTATTTCTCGACCCGATGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGTCATGATAGAGGAATTTTGCATCGAGATATAAAGGGGTCGAATCTTTTGATAGATAAAACGGGGATGCTTCAGATTGCAGATTTTGGACTTGCTAATTATTATAGTACAAATCAAGACCAACCTCTCACAAACCGGGTTGTGACACTATGGTACCGAGCTCCAGAGTTGTTGTTAGGCTCCACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGTTGTCTCCTTGCAGAAATGTTTAGAGGAGTTCCAATCATGCCTGGAAGAACTGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCATCACAAGAGTATTGGAAAAAGTTGAAACTTTCTACAACTTTTATACCTCCAAAGTCTTATAGACCAAGTCTGGTAGAATCTTTCAAGGATCTCCCCCCATCTTCTTTAGGTCTCTTATGTACACTTCTTGCTTTAGATCCCGCATTTCGTGGCAGTGCATCTAAAGCTCTTAAAAACCCGTTTTTCTTTACAAGCCCATTGGCTTGTGATCTATCTGGTTTACCTGCAATCTACAAAGGAGATGATGAGCATATTCTAGCCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATATGGAGCGTCGCAAGAATTTAGCATCTAATAAGCCAATCGAACATACCGTATCCTCTAAAGAGGTATTGAGTAATAATGCTGAGGCTGAAACTTATGCTCCAAGTGAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCAAGTGTAAACCAAGCTGGAATTGGGGACCATTCACCTCTCTTTCTCTCTCCATTTATGGCTTCTGATCAAAAGAAGCCCCACAAAATCCACAGTCATGCTAATATTGGTGAAAAAAACACCAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAATGCAACCAAGAGAGATGATAGCAGATACAGATCAGACCAGATTTTCAGGTCCACTTCCACCAGAGAATTTAGAAAGTTAAAACCAGATCAACATTTACTCTTTGATTAG 1776 0.3936 MGCVQAKPSQESDEGNYSGLNRFKMENGYVPSSDFVAHRRSTGQSQKHVLDQTNNYDHHRVYEKEKQPRKHKVVVDSSSVAGKGKRNGELKDSKKQLNKCFDDEMVDGWPKWLVDNVPSHGLDGLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKKVRFNTSEPESIKFMAREIAILQRLDHPNIVKLKGLATSRMQYSIYLVFDFMPTDLSRIISRPDERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKTGMLQIADFGLANYYSTNQDQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFRGVPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPPKSYRPSLVESFKDLPPSSLGLLCTLLALDPAFRGSASKALKNPFFFTSPLACDLSGLPAIYKGDDEHILAKEQIKYMNSKIRRSRTYMERRKNLASNKPIEHTVSSKEVLSNNAEAETYAPSEEPGSATSSTSSSVNQAGIGDHSPLFLSPFMASDQKKPHKIHSHANIGEKNTKNLPPLSKSKPNATKRDDSRYRSDQIFRSTSTREFRKLKPDQHLLFD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04556 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vivi1g04556 591 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g04556 591 MobiDBLite consensus disorder prediction 468 510 - -
Vivi1g04556 591 MobiDBLite consensus disorder prediction 526 571 - -
Vivi1g04556 591 Gene3D Phosphorylase Kinase; domain 1 125 215 - -
Vivi1g04556 591 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Vivi1g04556 591 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Vivi1g04556 591 ProSiteProfiles Protein kinase domain profile. 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04556 591 Pfam Protein kinase domain 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04556 591 MobiDBLite consensus disorder prediction 463 510 - -
Vivi1g04556 591 Gene3D Transferase(Phosphotransferase) domain 1 216 437 - -
Vivi1g04556 591 FunFam Putative serine/threonine-protein kinase 216 453 - -
Vivi1g04556 591 MobiDBLite consensus disorder prediction 555 571 - -
Vivi1g04556 591 SMART serkin_6 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04556 591 SUPERFAMILY Protein kinase-like (PK-like) 128 419 IPR011009 -
Vivi1g04556 591 PANTHER CELL DIVISION PROTEIN KINASE 131 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04556 Vivi-Chr1 97387940 97391090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04556 128 473 Core Cell Cycle Gene Families AT5G10270 42.857 7.40e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi1g04556 Pkinase 8.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04556 K08819 - gmx:100776854 840.876