Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04555 ATGGGCTGTGTTCAAGCCAAACCATCACAAGAATCTGATGAAGGTAATTACAGTGGACTAAACAGATTCAAAATGGAAAATGGGTATGTTCCAAGTTCTGATTTTGTTGCTCACAGAAGATCCACTGGTCAGAGTCAAAAACATGTTCTTGACCAGACTAACAACTATGATCATCATCGTGTTTATGAGAAAGAGAAACAACCCAGAAAACATAAAGTAGTTGTTGATTCTAGTAGTGTTGCTGGAAAAGGAAAGAGAAATGGTGAATTGAAAGATAGTAAGAAGCAGTTGAACAAGTGTTTTGATGATGAGATGGTTGATGGATGGCCTAAATGGTTAGTTGATAATGTTCCTTCTCATGGGTTGGATGGTTTGGTTCCAAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATCGAGACACGGGTGATATCGTGGCATTAAAAAAGGTCCGGTTCAATACGTCGGAGCCTGAAAGCATTAAGTTTATGGCAAGAGAAATTGCGATATTACAGAGATTGGATCATCCGAATATAGTGAAACTTAAAGGGTTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGATTTCATGCCCACAGATTTATCAAGAATTATTTCTCGACCCGATGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGTCATGATAGAGGAATTTTGCATCGAGATATAAAGGGGTCGAATCTTTTGATAGATAAAACGGGGATGCTTCAGATTGCAGATTTTGGACTTGCTAATTATTATAGTACAAATCAAGACCAACCTCTCACAAACCGGGTTGTGACACTATGGTACCGAGCTCCAGAGTTGTTGTTAGGCTCCACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGTTGTCTCCTTGCAGAAATGTTTAGAGGAGTTCCAATCATGCCTGGAAGAACTGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCATCACAAGAGTATTGGAAAAAGTTGAAACTTTCTACAACTTTTATACCTCCAAAGTCTTATAGACCAAGTCTGGTAGAATCTTTCAAGGATCTCCCCCCATCTTCTTTAGGTCTCTTATGTACACTTCTTGCTTTAGATCCCGCATTTCGTGGCAGTGCATCTAAAGCTCTTAAAAACCCGTTTTTCTTTACAAGCCCATTGGCTTGTGATCTATCTGGTTTACCTGCAATCTACAAAGGAGATGATGAGCATATTCTAGCCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATATGGAGCGTCGCAAGAATTTAGCATCTAATAAGCCAATCGAACATACCGTATCCTCTAAAGAGGTGAGTATTAAACCTGCTTTAGAACATCGTGCGACTAATGAAAATAATTTTTTTATTTATTTCGCAAACGATGCTATAAGAGTATGGTTATTATTTCAGGTATTGAGTAATAATGCTGAGGCTGAAACTTATGCTCCAAGTGAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCAAGTGTAAACCAAGCTGGAATTGGGGACCATTCACCTCTCTTTCTCTCTCCATTTATGGCTTCTGATCAAAAGAAGCCCCACAAAATCCACAGTCATGCTAATATTGGTGAAAAAAACACCAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAATGCAACCAAGAGAGATGATAGCAGATACAGATCAGACCAGATTTTCAGGTCCACTTCCACCAGAGAATTTAGAAAGTTAAAACCAGATCAACATTTACTCTTTGATTAG 1875 0.3883 MGCVQAKPSQESDEGNYSGLNRFKMENGYVPSSDFVAHRRSTGQSQKHVLDQTNNYDHHRVYEKEKQPRKHKVVVDSSSVAGKGKRNGELKDSKKQLNKCFDDEMVDGWPKWLVDNVPSHGLDGLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGDIVALKKVRFNTSEPESIKFMAREIAILQRLDHPNIVKLKGLATSRMQYSIYLVFDFMPTDLSRIISRPDERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKTGMLQIADFGLANYYSTNQDQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFRGVPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPPKSYRPSLVESFKDLPPSSLGLLCTLLALDPAFRGSASKALKNPFFFTSPLACDLSGLPAIYKGDDEHILAKEQIKYMNSKIRRSRTYMERRKNLASNKPIEHTVSSKEVSIKPALEHRATNENNFFIYFANDAIRVWLLFQVLSNNAEAETYAPSEEPGSATSSTSSSVNQAGIGDHSPLFLSPFMASDQKKPHKIHSHANIGEKNTKNLPPLSKSKPNATKRDDSRYRSDQIFRSTSTREFRKLKPDQHLLFD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04555 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vivi1g04555 624 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g04555 624 PANTHER CELL DIVISION PROTEIN KINASE 131 420 - -
Vivi1g04555 624 Gene3D Phosphorylase Kinase; domain 1 125 215 - -
Vivi1g04555 624 FunFam Putative serine/threonine-protein kinase 216 453 - -
Vivi1g04555 624 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Vivi1g04555 624 Pfam Protein kinase domain 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04555 624 MobiDBLite consensus disorder prediction 521 543 - -
Vivi1g04555 624 ProSiteProfiles Protein kinase domain profile. 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04555 624 MobiDBLite consensus disorder prediction 588 605 - -
Vivi1g04555 624 MobiDBLite consensus disorder prediction 562 605 - -
Vivi1g04555 624 SMART serkin_6 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04555 624 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Vivi1g04555 624 Gene3D Transferase(Phosphotransferase) domain 1 216 444 - -
Vivi1g04555 624 SUPERFAMILY Protein kinase-like (PK-like) 128 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04555 Vivi-Chr1 97387937 97391092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04555 128 491 Core Cell Cycle Gene Families AT5G10270 41.099 1.13e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi1g04555 Pkinase 1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04555 K08819 - gmx:100776854 825.083