Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04552 ATGGATCACGTCACCGAAGCCCTCCTGGCTGCCATCGGCAGCTTCATCATCGTCACATTCATATTCGCCGCCATCATACTCGTCTGTCAGCACCGCAAAATCACCCAATCCCGCCGTAATAACCAGATCCGAACCCGACCACTTCGAAACCCAAATCACTACCCTACCAGCTCAAACTCCCTCCCAGTTGACGCCAGCTGGTCCGAAGACCCCAATCTCAAGATCTCCATGGAAGAACTCTCCCGCGCCACCAATGACTTCTCCCCCAACCACATCGTCGGTGACGGCAGCTTCGGTCTCGTCTACAAAGCTCGTCTCTCCAACGGCGCCGTCGTCGCCGTGAAAAAACTATCCGCCGACGCCTTCCAAGGCTTTCGCGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTTCGTCACCAAAACATAGTCAAGATCCGCGGTTACTGGGCCTCAGGAGCTGAACGGTTACTCGTTTACGAGTTCATCGAAAAAGGAAACCTAGATCAATGGCTTCACGAACCTTCTCCCCCTACTCCCCCAAACAACGACGTTTCATCTTCAACAGATCTAATTCGTTCTCCTTTGTCTTGGGAAACAAGAGTCAACATCATGCGTGGTGTGGCCCATGGGCTTTGCTATTTACACGGGCTAGAAAAGCCCATTATTCATCGTGACATCAAAGCTAGCAATGTGTTGTTGGACTCTGATTTTCAGGCCTATATAGCTGATTTCGGGCTCGCACGTAGGATGGATAAATCACATTCGCACGTGTCAACGCAGGTGGCGGGTACTACAGGTTACATGCCTCCAGAGTATTGGCAAGGGTCTAATGTAGCATACCCGAAAGTGGATGTATATAGTTTTGGAGTGTTGATGATTGAAACTATGGCGGGCCATAGGCCCAATTTGTCTATCAAATTGGAAGGAACAGATATTGGGCTTGTTAATTGGGCCAGGAAGATGAAGGAAAGGAACACTGAAATGGAGATGCTGGACGTAAATATTCCAAGAGAAGAAGAAAATTTGAAGGAGGAGAGTGTTAAAGAGTATGTACACATTGCTTGTATGTGCACTAATGATTTACAGAAAGATAGGCCCCAAATGGCAGAGGTTGTCAAATTATTGGATTCAATGCCCTTATAA 1146 0.4834 MDHVTEALLAAIGSFIIVTFIFAAIILVCQHRKITQSRRNNQIRTRPLRNPNHYPTSSNSLPVDASWSEDPNLKISMEELSRATNDFSPNHIVGDGSFGLVYKARLSNGAVVAVKKLSADAFQGFREFAAEMETLSKLRHQNIVKIRGYWASGAERLLVYEFIEKGNLDQWLHEPSPPTPPNNDVSSSTDLIRSPLSWETRVNIMRGVAHGLCYLHGLEKPIIHRDIKASNVLLDSDFQAYIADFGLARRMDKSHSHVSTQVAGTTGYMPPEYWQGSNVAYPKVDVYSFGVLMIETMAGHRPNLSIKLEGTDIGLVNWARKMKERNTEMEMLDVNIPREEENLKEESVKEYVHIACMCTNDLQKDRPQMAEVVKLLDSMPL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04552 381 ProSiteProfiles Protein kinase domain profile. 87 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04552 381 SMART serkin_6 87 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04552 381 FunFam Phytosulfokine receptor 2 163 380 - -
Vivi1g04552 381 FunFam Phytosulfokine receptor 2 46 162 - -
Vivi1g04552 381 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Vivi1g04552 381 CDD STKc_IRAK 93 379 - -
Vivi1g04552 381 MobiDBLite consensus disorder prediction 38 62 - -
Vivi1g04552 381 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g04552 381 SUPERFAMILY Protein kinase-like (PK-like) 68 376 IPR011009 -
Vivi1g04552 381 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 378 - -
Vivi1g04552 381 Gene3D Transferase(Phosphotransferase) domain 1 163 380 - -
Vivi1g04552 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vivi1g04552 381 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04552 Vivi-Chr1 97340250 97342373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04552 15 376 Receptor kinase-like Gene Family AT5G07280 38.770 2.09e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vivi1g04552 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04552 - - psat:127091132 707.983